View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17584_low_1 (Length: 715)
Name: NF17584_low_1
Description: NF17584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17584_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 30 - 546
Target Start/End: Original strand, 13149647 - 13150163
Alignment:
| Q |
30 |
ctcttgttctcacttccaacaaatccaaactcttcaatactttcttgctgtggtaaaactggtgctgaatcatcaaactcaggaactgagaatccatcaa |
129 |
Q |
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| T |
13149647 |
ctcttgttctcacttccaacaaatccaaactcttcaatactttcttgttgtggtaaaactggtgctgaatcatcaaactctggaactgagaatccatcaa |
13149746 |
T |
|
| Q |
130 |
gata-gataaggataagatgatgatgcatcagttccataaggacattcaaatctatggtctaatggtgttgagaatgaagcaaatgaagggtttaaagat |
228 |
Q |
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| T |
13149747 |
gataagggtatgataa--tgatgatgcatcagttccataaggacattcaaatctatggtctaatggtgttgagaatgaagcaaatgaagggtttaaagat |
13149844 |
T |
|
| Q |
229 |
ggattgatgaaaagattttcatcaaatgagtcaaaggtccaaccattagggaatagtaactcattcaaaccattggataaagtattccatgtgtcttttc |
328 |
Q |
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| T |
13149845 |
ggattgatgagaagattttcatcaaatgagtcaaaggtccaaccattagggagtagtaactcattcaaaccagtggataaagtattccatgtgtcttttc |
13149944 |
T |
|
| Q |
329 |
ttggagctagtagctcctcaagaaaaccaagttgagaaagttccatttttctttctcttttcccacttttgtgaactatgagtaaactaaagaaaaacca |
428 |
Q |
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| T |
13149945 |
ttggagctagtagctcctcaagaaaaccaagttgagaaagttccatttttctttctcttttcccacttttgtgaactatgaataaactaaagaaaaacca |
13150044 |
T |
|
| Q |
429 |
aacagaaaagtctataacaatgggatgaagttgaacaaaatgggaggagtttcaagtttggttaaataatgctatgataagtaactatatgtact--ata |
526 |
Q |
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| T |
13150045 |
aacagaaaagtct-taacaatggaatgaagttgaacaaaatgggaggagtttcaagtttggttaaataatgctatgataagttactatatgtactaaata |
13150143 |
T |
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| Q |
527 |
tatattgtgtaccaatgctc |
546 |
Q |
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|||||||||||||||||||| |
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| T |
13150144 |
tatattgtgtaccaatgctc |
13150163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 19 - 418
Target Start/End: Complemental strand, 29009258 - 29008871
Alignment:
| Q |
19 |
tttgttccaaactcttgttctcacttccaacaaatccaaactcttcaatactttcttgctgtggtaaaactggtgctgaatcatcaaactcaggaactga |
118 |
Q |
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| T |
29009258 |
tttgttccaaactcttgttctcacttccaacaaatccaaactcttcaatactttcttgttgtggtaaaagtggtgctgaatcatcaaactcaggaactga |
29009159 |
T |
|
| Q |
119 |
gaatccatcaagatagataaggataagatgatgatgcatcagttccataaggacattcaaatctatggtctaatggtgttgagaatgaagcaaatgaagg |
218 |
Q |
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| T |
29009158 |
gaatcaatcaagatagataaggata---tgatgatgcatcagttccataaggacattcaaatctatggtctaatggtgttgagaatgaagcaaatgaagg |
29009062 |
T |
|
| Q |
219 |
gtttaaagatggattgatgaaaagattttcatcaaatgagtcaaaggtccaaccattagggaatagtaactcattcaaaccattggataaagtattccat |
318 |
Q |
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| T |
29009061 |
gtttaaagatggattgatgagaagattttcatcaaatgagtcaaaggtccaaccattagggagtagtaactcattcaaaccattggataaagtattccat |
29008962 |
T |
|
| Q |
319 |
gtgtcttttcttggagctagtagctcctcaagaaaaccaagttgagaaagttccatttttctttctcttttcccacttttgtgaactatgagtaaactaa |
418 |
Q |
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| T |
29008961 |
gtgtcttttcttggagctagtagctcctcaagaaaacca---------agttccatttttctctctcttttcccacttttgtgaactatgaataaactaa |
29008871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 415 - 546
Target Start/End: Complemental strand, 29007957 - 29007824
Alignment:
| Q |
415 |
ctaaagaaaaaccaaacagaaaagtctataacaatgggatgaagttgaacaaaatgggaggagtttcaagtttggttaaataatgctatgataagtaact |
514 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
29007957 |
ctaaagaaaaaccaaacagaaaagtctttaacaatgggatgaagttgaacaaaatgggaggagtttcaagtttggttaaataatgctatgataagtaatt |
29007858 |
T |
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| Q |
515 |
atatgtact--atatatattgtgtaccaatgctc |
546 |
Q |
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| T |
29007857 |
atatgtactaaatatatattgtgtaccaatgctc |
29007824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 569 - 691
Target Start/End: Complemental strand, 29007789 - 29007667
Alignment:
| Q |
569 |
gtattggactccctcgcggttaaggattttctgcattcacgtagtagacacattcaaagtcattctatcaagtcggacaattcaatttcatactcgatat |
668 |
Q |
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||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29007789 |
gtattggactccctcgcggttaaggattttctgcattcatgtggtagacacattcaaagtcattctatcaagtcggacaattcaatttcatactcgatat |
29007690 |
T |
|
| Q |
669 |
tataaagtctaaaataaaaatta |
691 |
Q |
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|||||| |||||||||||||||| |
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| T |
29007689 |
tataaactctaaaataaaaatta |
29007667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 174 - 280
Target Start/End: Original strand, 23851853 - 23851956
Alignment:
| Q |
174 |
ttcaaatctatggtctaatggtgttgagaatgaagcaaatgaagggtttaaagatggattgatgaaaagattttcatcaaatgagtcaaaggtccaacca |
273 |
Q |
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||||||||||||||||| |||||||||||||| | ||||||| || || |||||||| ||| || ||||| ||||||||||||||||||||||||||| |
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| T |
23851853 |
ttcaaatctatggtctattggtgttgagaatgtaacaaatgatggattgaaagatgggttg-tg--tagattgtcatcaaatgagtcaaaggtccaacca |
23851949 |
T |
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| Q |
274 |
ttaggga |
280 |
Q |
| |
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|||||| |
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| T |
23851950 |
gtaggga |
23851956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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