View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17584_low_10 (Length: 260)
Name: NF17584_low_10
Description: NF17584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17584_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 14 - 245
Target Start/End: Complemental strand, 40866582 - 40866346
Alignment:
| Q |
14 |
tactatgtgagtcagatctccactttgattggtacgaccctgatcatctatataaatttctatgtgtataacataattttctatgttactgagacctatc |
113 |
Q |
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| T |
40866582 |
tactatgtgagtcagatcttcactttgattggtacgaccctgatcatctatataaatttctatgtgtataacataattttctatgttactgagacctatc |
40866483 |
T |
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| Q |
114 |
aaaattaacggtgtttgataaaaatgcatacaccctcaatctcaatgagtattaataacatgaaataattttaaatatttagataatataaacttacaat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40866482 |
aaaattaacggtgtttgataaaaatgcatacaccctcaatctcaatgagtattaataacatgaaataattttaaatatttagatgatataaacttacaat |
40866383 |
T |
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| Q |
214 |
-----tgtcaaatttgaaaaaatatatatagagtaaa |
245 |
Q |
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||||||||| ||||||||||||| |||||||| |
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| T |
40866382 |
acgactgtcaaattagaaaaaatatatacagagtaaa |
40866346 |
T |
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