View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17584_low_11 (Length: 249)
Name: NF17584_low_11
Description: NF17584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17584_low_11 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 13 - 249
Target Start/End: Complemental strand, 8448301 - 8448077
Alignment:
| Q |
13 |
aaaataggacaggtttagcaataggaacttttgaatgagtataaggcggctatattttatannnnnnnngaatggaatattttgaaggaatacttgatct |
112 |
Q |
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| T |
8448301 |
aaaataggacaggtttagcaataggaacttttgaatgagtataaggcggctatattttatattttttttgaatggaatattttgaaggaatacttgatct |
8448202 |
T |
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| Q |
113 |
tctcatcatgagaaggtaaataagattcatagccttcatttacatttacatttacattaggggaatgattcagaaatccttatacttctaagagtgaggg |
212 |
Q |
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| T |
8448201 |
tctcatcatgagaaggtaaataagattcatagccttcatttacatt------------aggggaatgattcagaaatccttatacttctaagagtgaggg |
8448114 |
T |
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| Q |
213 |
cagtaagtatgttaagaatatcttagtcaactgatgt |
249 |
Q |
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| T |
8448113 |
cagtaagtatgttaagaatatcttagtcaactgatgt |
8448077 |
T |
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