View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17584_low_3 (Length: 437)
Name: NF17584_low_3
Description: NF17584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17584_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 2319269 - 2318849
Alignment:
| Q |
1 |
agatagagatagatagaagaagaagaagttatagggaaatcgactggatcgagtgtgagtgtgaaacagttcttgatggattctccagaagcttcgaaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2319269 |
agatagagatagatagaagaagaagaagttatagggaaatcgactggatcgagtgtgagtgtgaaacagttcttgatggattctccagaagcttcgaaga |
2319170 |
T |
|
| Q |
101 |
tcaataacatttcttcttctctctccactatcaatgccgccacaaacaatccttctgatgaatcccctcaagttcaagtatacttcatttcttaattaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2319169 |
tcaataacatttcttcttctctctccactatcaatgccgccacaaacaatccttctgatgaatcccctcaagttcaagtatacttcatttcttaattaat |
2319070 |
T |
|
| Q |
201 |
taattaactcttcctctttttctatcaagatcagattgttatgttgtttgtctgtctttatgtttcgaatctaatcaatatatatgtcatttattgttgt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2319069 |
taattaactcttcctctttttctatcaagatcagattcttatgttgtttgtctgtctttatgtttcgaatctaatcaatatatatgtcatttattgttgt |
2318970 |
T |
|
| Q |
301 |
ttcgaattacatttgcttttgatgaaatttctgtctaccttaaagttgttgtcatgtcactgaaaaaacaagctaaggctgtgaacagtgggaccccttc |
400 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2318969 |
ttcgaattacatttgctttcgatgaaatttctgtctaccttaaagttgttgtcatgtcactgaaaaaacaagctaaggctgtgaacagtgggaccccttc |
2318870 |
T |
|
| Q |
401 |
acagatatgcgggagctttat |
421 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
2318869 |
acagatatgcgggagctttat |
2318849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University