View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17584_low_5 (Length: 357)
Name: NF17584_low_5
Description: NF17584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17584_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 16 - 348
Target Start/End: Complemental strand, 47506004 - 47505672
Alignment:
| Q |
16 |
atttatacgtggcacgcagctttcctcatgagagtaattccaaattggtctgtttgttaattttgggtttctcatcaactttttctgcaccattgaatat |
115 |
Q |
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| T |
47506004 |
atttatacgtggcacgcagctttcctcatgagagtaattccaaattggtctgtttgttaattttgggtttctcatcaactttttctgcaccattgaatat |
47505905 |
T |
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| Q |
116 |
ctgctcaaaatccaactatgcttctataaaataatttgttaaaagagaagaatcatttgattattgcaataaataaatcacatgagtagcatgtttttcg |
215 |
Q |
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| T |
47505904 |
ctgctcaaaatccaactatgcttctataaaataatttgttaaaagagaagaatcatttgattattgcaataaataaatcacatgagtagcatgtttttcg |
47505805 |
T |
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| Q |
216 |
aaatcagcatctctgtgtatcatctgcagactgcagcagtcacttcccttaattttctttattcgttttttataaattttatgtgtactcatatttctga |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47505804 |
aaatcagcatctctgtgtatcatctgcagactgcagcagtcacttcccttaattttctttattcgttttttataaattttatgtgtactcatatttctga |
47505705 |
T |
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| Q |
316 |
acaaatctactgatagttatgatccagaataat |
348 |
Q |
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| T |
47505704 |
acaaatctactgatagttatgatccagattaat |
47505672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 159 - 234
Target Start/End: Complemental strand, 32670708 - 32670633
Alignment:
| Q |
159 |
agagaagaatcatttgattattgcaataaataaatcacatgagtagcatgtttttcgaaatcagcatctctgtgta |
234 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32670708 |
agagaagaatcatttgattattgcaataaataaatcacatgagtagcatgtttttcgaaatcagcatatctgtgta |
32670633 |
T |
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