View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17584_low_8 (Length: 270)
Name: NF17584_low_8
Description: NF17584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17584_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 30 - 252
Target Start/End: Complemental strand, 45312999 - 45312777
Alignment:
| Q |
30 |
attgtggaggaatgttaataatggatgtaaggattgagatagcagcaagcgtgaagaagaaattccaatgcacaccatattcagccaaatgcacctattc |
129 |
Q |
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| T |
45312999 |
attgtggaggaatgttaataaaggatgtaaggattgagatagcagcaagcgtaaagaagaaattccaatgcacaccatattcagccaaatgcacctattc |
45312900 |
T |
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| Q |
130 |
gaggaaaaacaattactagcttccttgagaaaatcgtgaatttgacaaaaactcaatttgtaaagaatgagaaggaaaacatattattggcttcctcaaa |
229 |
Q |
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| T |
45312899 |
gaggaaaaacaattactagcttccttgagaaaatcgtgaatttgacaaaaactcaatttgtaaagaatgagaaggaaaacatattattggcttcctcaaa |
45312800 |
T |
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| Q |
230 |
attgacttgaattatctctgacc |
252 |
Q |
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| T |
45312799 |
attgacttgaattatctctgacc |
45312777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 30 - 177
Target Start/End: Complemental strand, 27758687 - 27758540
Alignment:
| Q |
30 |
attgtggaggaatgttaataatggatgtaaggattgagatagcagcaagcgtgaagaagaaattccaatgcacaccatattcagccaaatgcacctattc |
129 |
Q |
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| T |
27758687 |
attgtggaggaatgttaataacggatgtaaggatcgagatagcagcaagcgtgaagaagaaattccaatgcacaccatattcagccaaatgcacctattc |
27758588 |
T |
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| Q |
130 |
gaggaaaaacaattactagcttccttgagaaaatcgtgaatttgacaa |
177 |
Q |
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| T |
27758587 |
gaggaaaaacaattactagcttccttgagaaaatcgtgaattagacaa |
27758540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 176 - 252
Target Start/End: Complemental strand, 27758512 - 27758436
Alignment:
| Q |
176 |
aaaaactcaatttgtaaagaatgagaaggaaaacatattattggcttcctcaaaattgacttgaattatctctgacc |
252 |
Q |
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||||||| ||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
27758512 |
aaaaacttaatgtgtaaagaatgagaaggaaaatatattattggcttcctaaaaattgacttgaattatctccgacc |
27758436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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