View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17585_low_1 (Length: 597)

Name: NF17585_low_1
Description: NF17585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17585_low_1
NF17585_low_1
[»] chr8 (20 HSPs)
chr8 (67-559)||(7387958-7388451)
chr8 (10-83)||(7388588-7388661)
chr8 (207-550)||(7681195-7681545)
chr8 (237-372)||(2148338-2148473)
chr8 (235-342)||(10381373-10381479)
chr8 (253-372)||(29841185-29841304)
chr8 (249-342)||(43421477-43421570)
chr8 (222-369)||(44873224-44873370)
chr8 (246-296)||(32161484-32161534)
chr8 (236-316)||(37042524-37042604)
chr8 (461-554)||(2148561-2148659)
chr8 (508-554)||(24556732-24556778)
chr8 (247-317)||(29866126-29866195)
chr8 (508-554)||(41303332-41303378)
chr8 (508-554)||(44873518-44873564)
chr8 (237-317)||(24556977-24557056)
chr8 (247-281)||(7392173-7392207)
chr8 (255-304)||(6978416-6978465)
chr8 (461-497)||(34696914-34696950)
chr8 (261-317)||(36051241-36051297)
[»] chr2 (10 HSPs)
chr2 (210-371)||(27447722-27447883)
chr2 (205-342)||(38417711-38417848)
chr2 (207-369)||(7700263-7700424)
chr2 (507-553)||(38417962-38418008)
chr2 (505-554)||(3356921-3356970)
chr2 (508-554)||(32033206-32033252)
chr2 (208-293)||(16639293-16639378)
chr2 (461-552)||(7700522-7700618)
chr2 (526-554)||(16639006-16639034)
chr2 (261-317)||(37623576-37623632)
[»] chr5 (15 HSPs)
chr5 (247-372)||(5568976-5569101)
chr5 (247-357)||(980181-980291)
chr5 (247-368)||(33824755-33824876)
chr5 (253-372)||(39509128-39509247)
chr5 (235-369)||(34751098-34751231)
chr5 (247-369)||(36744901-36745022)
chr5 (505-553)||(5569189-5569237)
chr5 (207-356)||(25818999-25819149)
chr5 (235-353)||(26459644-26459761)
chr5 (461-553)||(39509262-39509359)
chr5 (464-551)||(36745122-36745214)
chr5 (250-312)||(35676332-35676394)
chr5 (249-317)||(43144527-43144594)
chr5 (461-554)||(43144743-43144841)
chr5 (247-296)||(5069805-5069854)
[»] chr7 (33 HSPs)
chr7 (253-554)||(25232916-25233226)
chr7 (265-372)||(26787258-26787365)
chr7 (270-369)||(39785484-39785583)
chr7 (424-550)||(26787418-26787552)
chr7 (505-554)||(1247859-1247908)
chr7 (467-554)||(2945222-2945314)
chr7 (247-311)||(49143969-49144033)
chr7 (508-554)||(24658654-24658700)
chr7 (247-342)||(30074676-30074772)
chr7 (505-554)||(38300203-38300252)
chr7 (268-355)||(26824472-26824559)
chr7 (456-550)||(33597994-33598093)
chr7 (508-554)||(1691881-1691927)
chr7 (267-329)||(16841052-16841114)
chr7 (508-554)||(27080644-27080690)
chr7 (508-554)||(27197611-27197657)
chr7 (299-357)||(40716946-40717004)
chr7 (236-293)||(34346903-34346960)
chr7 (267-369)||(2945416-2945519)
chr7 (257-317)||(13094632-13094692)
chr7 (507-554)||(25617890-25617937)
chr7 (251-294)||(32221932-32221975)
chr7 (253-296)||(33941720-33941763)
chr7 (453-554)||(40716740-40716847)
chr7 (247-281)||(7899448-7899482)
chr7 (512-554)||(8062581-8062623)
chr7 (247-281)||(26050128-26050162)
chr7 (247-281)||(26059487-26059521)
chr7 (508-554)||(33941465-33941511)
chr7 (509-554)||(38838346-38838391)
chr7 (261-317)||(33255012-33255068)
chr7 (510-554)||(46090019-46090063)
chr7 (214-294)||(46090290-46090370)
[»] chr3 (24 HSPs)
chr3 (204-342)||(30136505-30136642)
chr3 (204-342)||(30142634-30142771)
chr3 (204-342)||(30146056-30146193)
chr3 (205-342)||(6714416-6714552)
chr3 (247-369)||(23778219-23778345)
chr3 (453-554)||(35502354-35502460)
chr3 (208-342)||(24309801-24309934)
chr3 (424-554)||(30136728-30136862)
chr3 (424-554)||(30142857-30142991)
chr3 (424-554)||(30146279-30146413)
chr3 (253-342)||(26285869-26285957)
chr3 (261-357)||(395927-396023)
chr3 (464-554)||(24310059-24310154)
chr3 (235-353)||(7856449-7856568)
chr3 (253-317)||(25032174-25032237)
chr3 (208-280)||(35504214-35504286)
chr3 (236-296)||(36475420-36475480)
chr3 (505-554)||(26285649-26285698)
chr3 (253-342)||(36478231-36478319)
chr3 (509-554)||(41897724-41897769)
chr3 (247-281)||(19832034-19832068)
chr3 (508-554)||(23778489-23778535)
chr3 (508-554)||(38573208-38573254)
chr3 (253-281)||(19831986-19832014)
[»] chr6 (13 HSPs)
chr6 (203-372)||(1975270-1975439)
chr6 (235-342)||(16461677-16461783)
chr6 (257-351)||(8150815-8150909)
chr6 (257-356)||(30702669-30702768)
chr6 (251-317)||(2919958-2920023)
chr6 (465-554)||(14607591-14607685)
chr6 (505-554)||(6689425-6689474)
chr6 (453-554)||(21883429-21883535)
chr6 (508-554)||(2919869-2919915)
chr6 (205-275)||(6689130-6689200)
chr6 (252-302)||(19267059-19267109)
chr6 (260-306)||(30705270-30705316)
chr6 (284-357)||(14607795-14607867)
[»] chr4 (16 HSPs)
chr4 (208-356)||(1111924-1112071)
chr4 (251-369)||(2158598-2158715)
chr4 (207-342)||(33517953-33518087)
chr4 (235-357)||(2813941-2814062)
chr4 (464-554)||(4377464-4377560)
chr4 (247-342)||(4377200-4377294)
chr4 (247-353)||(36247791-36247897)
chr4 (464-554)||(36248055-36248150)
chr4 (235-317)||(35390429-35390511)
chr4 (256-317)||(50723219-50723279)
chr4 (466-553)||(25023062-25023153)
chr4 (261-317)||(30804379-30804435)
chr4 (508-554)||(2158862-2158908)
chr4 (508-554)||(2815805-2815851)
chr4 (261-323)||(46671916-46671978)
chr4 (223-295)||(17938868-17938940)
[»] chr1 (18 HSPs)
chr1 (208-329)||(23347781-23347902)
chr1 (461-554)||(9477805-9477903)
chr1 (254-355)||(9539648-9539748)
chr1 (249-353)||(10781254-10781357)
chr1 (461-554)||(9539441-9539539)
chr1 (508-554)||(27464086-27464132)
chr1 (505-554)||(6226911-6226960)
chr1 (461-553)||(8065160-8065257)
chr1 (505-554)||(25031174-25031223)
chr1 (505-554)||(31738116-31738165)
chr1 (253-369)||(8064950-8065065)
chr1 (247-281)||(281144-281178)
chr1 (247-281)||(9516763-9516797)
chr1 (208-342)||(27464306-27464439)
chr1 (247-281)||(43909373-43909407)
chr1 (247-280)||(35438898-35438931)
chr1 (235-295)||(1405901-1405961)
chr1 (261-317)||(29703064-29703120)
[»] scaffold0002 (1 HSPs)
scaffold0002 (247-369)||(461348-461469)
[»] scaffold0535 (2 HSPs)
scaffold0535 (236-323)||(9625-9712)
scaffold0535 (505-554)||(9903-9952)


Alignment Details
Target: chr8 (Bit Score: 370; Significance: 0; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 67 - 559
Target Start/End: Complemental strand, 7388451 - 7387958
Alignment:
Q  67 acttcaaacttaactttaacaaatattaaatcaaagaaagactaaaggtttatatgaaaaaacttaaatctaaatagttaagcttcatcgggaagcattc 166  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  7388451 acttcaaacttaactttaacaaatattaaatcaaagaaagaccaaaggtttatatgaaaaaacttaaatctaaatagtta-gcttcatcgggaagcattc 7388353  T
Q  167 aaggaaattttcagatacttgaag-atacaatgaacaaagacggatctagacattcggtatatgcgtaactaaaatatcagagaaaaaataatgcaaatt 265  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  7388352 aaggaaattttcagatacttgaaggatacaataaacaaagacggatctagacattcggtatatgcgtaactaaaatatcagagaaaaaataatgcagatt 7388253  T
Q  266 atattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaattgttgaaaacgtgctaaaataacaatattgct 365  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  | |||||||||||||||||||||||||||| || ||||||    
T  7388252 atattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaattgtcttctttccaattgttgaaaacgtgctaaaataaaaacattgct 7388153  T
Q  366 aattttttnnnnnnnnncatttatttctataaaagttacaaga----gatttagcaactagacacttattttgttacatattgaatgttcaaactttttt 461  Q
    |||||||          |||||||||||||| |||||||||||     |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  7388152 aattttt---aaaaaaacatttatttctatataagttacaagacggtcatttagcaactagacatttattttgttacatattgaatgttcaaactttttt 7388056  T
Q  462 agctgaaaaaacatgtttaacacttgcaattgctactcacaagagtcaacttcaaaagattataaatcataacaaatgtgttgcacttatttgatttg 559  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  7388055 agctgaaaaaacatgttcaacacttgcaattgctactcacaagagccaacttcaaaagattataaatcataacaaatgtgttgcacctatttgatttg 7387958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 10 - 83
Target Start/End: Complemental strand, 7388661 - 7388588
Alignment:
Q  10 tttattgttgtgttgtacatggacttataaaggtgaataagaattgaattttgcatgacttcaaacttaacttt 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  7388661 tttattgttgtgttgtacatggacttataaaggtgaataagaattgaattttgcaggacttcaaacttaacttt 7388588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 207 - 550
Target Start/End: Complemental strand, 7681545 - 7681195
Alignment:
Q  207 cggatctagacattcggtatatgcgtaactaaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaat 306  Q
    |||||||||||||| |||||||| ||   |||||| ||| ||||| |||||| |||| ||||||||||| ||||| ||||||||||||||  ||||  ||    
T  7681545 cggatctagacatttggtatatgtgtggttaaaatttcaaagaaataataatacaaactatattaaaaacaagaaataacattgtttgatacaata-tat 7681447  T
Q  307 tacaataaaaactgtctcttatccaattgttgaaaacgtgctaaaataacaatattgctaattttttnnnnnnnnncatttatttctataaaagttacaa 406  Q
    |||||| ||||  || || |||||| |||||||||| || ||||||| |||  |||||||||| ||          ||| | |||||||| |||||| ||    
T  7681446 tacaatgaaaatcgtttcctatccatttgttgaaaatgttctaaaatgacatcattgctaattgtt---aaaagaacatatctttctatataagttataa 7681350  T
Q  407 g----agatttagcaactagacacttattttgttacata-ttgaatgttca-aacttttttagctgaaaaaacatgtttaacacttgcaattgctactca 500  Q
    |    | ||||||| ||||  ||  |||||||||||||| |||| | |||| ||||||| |||| ||||||||||||| ||||||||||  ||||||  |    
T  7681349 gacgaatatttagctactaatcatctattttgttacatagttgactcttcacaacttttatagcagaaaaaacatgttcaacacttgcatatgctaccaa 7681250  T
Q  501 caagag-----tcaacttcaaaagattataaatcataacaaatgtgttgcactta 550  Q
    ||||||     |||| |||||||| |||||||| |||| ||||||||||||||||    
T  7681249 caagagcaaaatcaatttcaaaagtttataaataataataaatgtgttgcactta 7681195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 237 - 372
Target Start/End: Original strand, 2148338 - 2148473
Alignment:
Q  237 aaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaattgt 336  Q
    ||||| ||| |||||  ||||||||||||||| |||||||||||| |||||||| |||||| |||||||||||||| ||||   ||| |||| || ||||    
T  2148338 aaaatttcaaagaaactataatgcaaattatactaaaaataagaaataacattgattgatgcaatacaattacaatgaaaataatctattatacatttgt 2148437  T
Q  337 tgaaaacgtgctaaaataacaatattgctaattttt 372  Q
    ||||||||  |||||||| ||  |||||||||||||    
T  2148438 tgaaaacgaactaaaatagcatcattgctaattttt 2148473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 235 - 342
Target Start/End: Original strand, 10381373 - 10381479
Alignment:
Q  235 ctaaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaatt 334  Q
    ||||||| ||| ||||| ||||||| ||| ||||||||||||||||| |||||||||||||| |||||| |||||||| |||| ||||||||||| | ||    
T  10381373 ctaaaatttcaaagaaacaataatgtaaactatattaaaaataagaagtaacattgtttgatataatac-attacaatcaaaattgtctcttatctattt 10381471  T
Q  335 gttgaaaa 342  Q
    ||||||||    
T  10381472 gttgaaaa 10381479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 253 - 372
Target Start/End: Complemental strand, 29841304 - 29841185
Alignment:
Q  253 aataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaattgttgaaaacgtgctaaaa 352  Q
    ||||||||||| ||||| ||||||||||| |||||||||||||| ||||| ||||| ||| |||| |||||| |||| | |||||||||| | | |||||    
T  29841304 aataatgcaaactatataaaaaataagaaataacattgtttgatataatataattataatgaaaattgtctcatatctatttgttgaaaatgggttaaaa 29841205  T
Q  353 taacaatattgctaattttt 372  Q
    ||||||   |||||||||||    
T  29841204 taacaacggtgctaattttt 29841185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 249 - 342
Target Start/End: Original strand, 43421477 - 43421570
Alignment:
Q  249 aaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaattgttgaaaa 342  Q
    |||||| |||||||| ||||||||||||||| | ||||||||||||||| |||||||||||||||||||  ||||  |||| | ||||||||||    
T  43421477 aaaaaagaatgcaaactatattaaaaataagtaataacattgtttgatgcaatacaattacaataaaaatcgtcttctatctatttgttgaaaa 43421570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 222 - 369
Target Start/End: Original strand, 44873224 - 44873370
Alignment:
Q  222 ggtatatgcgtaactaaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgt 321  Q
    |||| ||||| | ||||||| | | ||||| ||||||||||| ||||||||||||||||| ||| ||||||||||  ||||| |||||||| ||||  ||    
T  44873224 ggtacatgcggagctaaaattttaaagaaacaataatgcaaactatattaaaaataagaaataatattgtttgatacaatac-attacaatgaaaatcgt 44873322  T
Q  322 ctcttatccaattgttgaaaacgtgctaaaataacaatattgctaatt 369  Q
    ||  |||||| |||||||||| | | ||||||||||  ||||||||||    
T  44873323 cttctatccatttgttgaaaatgagttaaaataacatgattgctaatt 44873370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 246 - 296
Target Start/End: Complemental strand, 32161534 - 32161484
Alignment:
Q  246 gagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgat 296  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  32161534 gagaaaaaataatgcaaattatattaaaaataagaaataacattgtttgat 32161484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 316
Target Start/End: Complemental strand, 37042604 - 37042524
Alignment:
Q  236 taaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaa 316  Q
    |||||| ||| ||||||||||||| | |||||||||||||||||||  || ||| ||| ||  ||||||||||||||||||    
T  37042604 taaaatttcaaagaaaaaataatgtagattatattaaaaataagaaaaaatattatttaatacaatacaattacaataaaa 37042524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 554
Target Start/End: Original strand, 2148561 - 2148659
Alignment:
Q  461 tagctgaaaaaacatgtttaacacttgcaattgctactcacaagagtcaa-----cttcaaaagattataaatcataacaaatgtgttgcacttatttg 554  Q
    |||||||||||||| ||| |||| ||||| |||||||  |||||||  ||     ||||||||| ||||||||||||  ||||||||||||||||||||    
T  2148561 tagctgaaaaaacacgttcaacatttgcagttgctaccgacaagagcaaagccagcttcaaaagcttataaatcatagaaaatgtgttgcacttatttg 2148659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 508 - 554
Target Start/End: Complemental strand, 24556778 - 24556732
Alignment:
Q  508 caacttcaaaagattataaatcataacaaatgtgttgcacttatttg 554  Q
    |||||||||||  ||||||| ||||||||||||||||||||||||||    
T  24556778 caacttcaaaatcttataaaccataacaaatgtgttgcacttatttg 24556732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 317
Target Start/End: Original strand, 29866126 - 29866195
Alignment:
Q  247 agaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaa 317  Q
    ||||||||||||||||| ||||||| ||||||||| ||| ||||||||||  ||||| |||||||| ||||    
T  29866126 agaaaaaataatgcaaactatattataaataagaaataatattgtttgatacaatac-attacaatgaaaa 29866195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 508 - 554
Target Start/End: Complemental strand, 41303378 - 41303332
Alignment:
Q  508 caacttcaaaagattataaatcataacaaatgtgttgcacttatttg 554  Q
    |||||||||||| ||| |||||||| |||||||||||||||||||||    
T  41303378 caacttcaaaagcttacaaatcatagcaaatgtgttgcacttatttg 41303332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 508 - 554
Target Start/End: Original strand, 44873518 - 44873564
Alignment:
Q  508 caacttcaaaagattataaatcataacaaatgtgttgcacttatttg 554  Q
    |||||||||||| |||||||||||||||| |||||||||| ||||||    
T  44873518 caacttcaaaagtttataaatcataacaattgtgttgcacatatttg 44873564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 317
Target Start/End: Complemental strand, 24557056 - 24556977
Alignment:
Q  237 aaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaa 317  Q
    ||||| ||| ||||| ||||||  |||||||||||||||||| || ||||||||||||||  ||||| |||||||| ||||    
T  24557056 aaaatttcaaagaaacaataatttaaattatattaaaaataataaataacattgtttgatacaatac-attacaatgaaaa 24556977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 247 - 281
Target Start/End: Original strand, 7392173 - 7392207
Alignment:
Q  247 agaaaaaataatgcaaattatattaaaaataagaa 281  Q
    ||||| |||||||||||||||||||||||||||||    
T  7392173 agaaataataatgcaaattatattaaaaataagaa 7392207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 304
Target Start/End: Complemental strand, 6978465 - 6978416
Alignment:
Q  255 taatgcaaattatattaaaaataagaattaacattgtttgatgtaataca 304  Q
    ||||| ||| ||||||||||||||||| ||| |||||||||| |||||||    
T  6978465 taatgtaaactatattaaaaataagaaataatattgtttgatataataca 6978416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 461 - 497
Target Start/End: Complemental strand, 34696950 - 34696914
Alignment:
Q  461 tagctgaaaaaacatgtttaacacttgcaattgctac 497  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  34696950 tagctgaaaaaacacgttcaacacttgcaattgctac 34696914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 261 - 317
Target Start/End: Original strand, 36051241 - 36051297
Alignment:
Q  261 aaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaa 317  Q
    |||||||| ||||||||| || ||| ||||||||||  |||||| ||||||||||||    
T  36051241 aaattatagtaaaaataataaataatattgtttgattcaatacatttacaataaaaa 36051297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 2e-38; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 210 - 371
Target Start/End: Complemental strand, 27447883 - 27447722
Alignment:
Q  210 atctagacattcggtatatgcgtaactaaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattac 309  Q
    ||||||||||| | |||||| ||  ||||||| ||| ||||||||||||||| ||||| ||||||||||||| ||| |||||||||||||||||||||||    
T  27447883 atctagacatttgatatatgtgtggctaaaatttcaaagaaaaaataatgcagattatgttaaaaataagaaataatattgtttgatgtaatacaattac 27447784  T
Q  310 aataaaaactgtctcttatccaattgttgaaaacgtgctaaaataacaatattgctaatttt 371  Q
    ||| |||| |||||| |||| | || ||| ||||| |||||||||||||||| |||||||||    
T  27447783 aatgaaaattgtctcatatctatttattggaaacgagctaaaataacaatatagctaatttt 27447722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 205 - 342
Target Start/End: Original strand, 38417711 - 38417848
Alignment:
Q  205 gacggatctagacattcggtatatgcgtaactaaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaataca 304  Q
    |||||||||||| |||||||||||| ||  ||||||| | | ||||||| ||||||||  ||||||||||||||||| |||| ||| |||||| ||||||    
T  38417711 gacggatctagatattcggtatatgtgtgcctaaaattttaaagaaaaactaatgcaagctatattaaaaataagaaataactttggttgatgcaataca 38417810  T
Q  305 attacaataaaaactgtctcttatccaattgttgaaaa 342  Q
    |||||| | |||| |||||| |||||| ||||||||||    
T  38417811 attacagtgaaaattgtctcctatccatttgttgaaaa 38417848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 207 - 369
Target Start/End: Original strand, 7700263 - 7700424
Alignment:
Q  207 cggatctagacattcggtatatgcgtaactaaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaat 306  Q
    |||||||| ||||| | |||||| ||  ||||||| ||| ||||| ||||||| ||| ||||| ||||||||||| ||||||||||||||  ||||| ||    
T  7700263 cggatctacacatttgatatatgtgtggctaaaatttcaaagaaacaataatgtaaactatataaaaaataagaaataacattgtttgatacaatac-at 7700361  T
Q  307 tacaataaaaactgtctcttatccaattgttgaaaacgtgctaaaataacaatattgctaatt 369  Q
    | |||| ||||   |||| ||| ||  ||||||||| | |||||||| |||  ||||||||||    
T  7700362 tgcaatgaaaatcatctcatattcatatgttgaaaatgagctaaaatgacatcattgctaatt 7700424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 507 - 553
Target Start/End: Original strand, 38417962 - 38418008
Alignment:
Q  507 tcaacttcaaaagattataaatcataacaaatgtgttgcacttattt 553  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||    
T  38417962 tcaacttcaaaagcttataaatcataacaaatatgttgcacttattt 38418008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 505 - 554
Target Start/End: Complemental strand, 3356970 - 3356921
Alignment:
Q  505 agtcaacttcaaaagattataaatcataacaaatgtgttgcacttatttg 554  Q
    ||||||||||||||| |||||||||||| ||||||||||||| |||||||    
T  3356970 agtcaacttcaaaagtttataaatcatagcaaatgtgttgcatttatttg 3356921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 508 - 554
Target Start/End: Original strand, 32033206 - 32033252
Alignment:
Q  508 caacttcaaaagattataaatcataacaaatgtgttgcacttatttg 554  Q
    |||||||||||| |||||||||||| ||||||||||||| |||||||    
T  32033206 caacttcaaaagtttataaatcatagcaaatgtgttgcatttatttg 32033252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 208 - 293
Target Start/End: Complemental strand, 16639378 - 16639293
Alignment:
Q  208 ggatctagacattcggtatatgcgtaactaaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgttt 293  Q
    |||| |||||||| ||||||||  | |||||||| | | ||||| |||||| |||| ||||||||||||||||| | |||||||||    
T  16639378 ggatttagacatttggtatatgtatgactaaaattttaaagaaacaataatacaaactatattaaaaataagaaattacattgttt 16639293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 461 - 552
Target Start/End: Original strand, 7700522 - 7700618
Alignment:
Q  461 tagctgaaaaaacatgtttaacacttgcaattgctactcacaagag-----tcaacttcaaaagattataaatcataacaaatgtgttgcacttatt 552  Q
    |||||||||||||| ||| |||| |||||| ||||||   ||||||     ||||| ||||||| ||||||| |||||||||||||||| |||||||    
T  7700522 tagctgaaaaaacacgttcaacatttgcaaatgctaccagcaagagcaaagtcaacgtcaaaagcttataaaccataacaaatgtgttgaacttatt 7700618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 526 - 554
Target Start/End: Complemental strand, 16639034 - 16639006
Alignment:
Q  526 aatcataacaaatgtgttgcacttatttg 554  Q
    |||||||||||||||||||||||||||||    
T  16639034 aatcataacaaatgtgttgcacttatttg 16639006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 261 - 317
Target Start/End: Complemental strand, 37623632 - 37623576
Alignment:
Q  261 aaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaa 317  Q
    |||||||| ||||||||| || ||||||||||||||  |||||| ||| ||||||||    
T  37623632 aaattatactaaaaataataaataacattgtttgattcaatacatttaaaataaaaa 37623576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 5e-36; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 247 - 372
Target Start/End: Original strand, 5568976 - 5569101
Alignment:
Q  247 agaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaattgttgaaaacgtg 346  Q
    ||||||||||||||||| ||||||||||||||||| |||||||| |||||| |||||||||||||| |||| |||||| |||||| |||||||||| | |    
T  5568976 agaaaaaataatgcaaactatattaaaaataagaaataacattggttgatgcaatacaattacaatgaaaattgtctcgtatccatttgttgaaaatgag 5569075  T
Q  347 ctaaaataacaatattgctaattttt 372  Q
     ||||||||||| |||||||||||||    
T  5569076 ttaaaataacaacattgctaattttt 5569101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 247 - 357
Target Start/End: Complemental strand, 980291 - 980181
Alignment:
Q  247 agaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaattgttgaaaacgtg 346  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||   ||| ||||| | |||||||||| ||     
T  980291 agaaataataatgcaaattatattaaaaataagaaataacattgtttgatgtaatacaattacaataaaaatcatctattatctatttgttgaaaatgta 980192  T
Q  347 ctaaaataaca 357  Q
    |||||||||||    
T  980191 ctaaaataaca 980181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 247 - 368
Target Start/End: Complemental strand, 33824876 - 33824755
Alignment:
Q  247 agaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaattgttgaaaacgtg 346  Q
    ||||| ||||||||||| ||||||||||||||||| ||||||||||||||| | |||||||||||| ||||  ||||| ||| || |||||||||| | |    
T  33824876 agaaacaataatgcaaaatatattaaaaataagaaataacattgtttgatgcagtacaattacaatgaaaatcgtctcctattcatttgttgaaaatgag 33824777  T
Q  347 ctaaaataacaatattgctaat 368  Q
     ||||||||||  |||||||||    
T  33824776 ttaaaataacatcattgctaat 33824755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 253 - 372
Target Start/End: Original strand, 39509128 - 39509247
Alignment:
Q  253 aataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaattgttgaaaacgtgctaaaa 352  Q
    ||||||||||||||||| ||||||||||  ||||||||||||||  |||||||||||||| |||| |||||   ||| | |||||||||| |  || |||    
T  39509128 aataatgcaaattatatgaaaaataagatataacattgtttgatacaatacaattacaatgaaaattgtcttccatcaatttgttgaaaatgaactgaaa 39509227  T
Q  353 taacaatattgctaattttt 372  Q
    ||||||| ||||| ||||||    
T  39509228 taacaatgttgctgattttt 39509247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 235 - 369
Target Start/End: Complemental strand, 34751231 - 34751098
Alignment:
Q  235 ctaaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaatt 334  Q
    ||||||| ||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||  ||||| |||| ||| ||||   |||| | || | ||    
T  34751231 ctaaaatttcaaagaaacaataatgcaaattatattaaaaataagaagtaacattgtttgatacaatac-attaaaatgaaaatcatctcgtgtctattt 34751133  T
Q  335 gttgaaaacgtgctaaaataacaatattgctaatt 369  Q
    |||||||| | |||||||| |||  ||||||||||    
T  34751132 gttgaaaatgagctaaaatgacatcattgctaatt 34751098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 247 - 369
Target Start/End: Original strand, 36744901 - 36745022
Alignment:
Q  247 agaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaattgttgaaaacgtg 346  Q
    ||||| ||||||||||| |||||||||| |||||| ||| ||||||||||  |||| ||||||||| ||||  ||||  |||||| |||||||||| | |    
T  36744901 agaaacaataatgcaaactatattaaaagtaagaaataatattgtttgatacaata-aattacaattaaaatcgtcttatatccatttgttgaaaatgag 36744999  T
Q  347 ctaaaataacaatattgctaatt 369  Q
    ||||||| |||  ||||||||||    
T  36745000 ctaaaatgacatcattgctaatt 36745022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 505 - 553
Target Start/End: Original strand, 5569189 - 5569237
Alignment:
Q  505 agtcaacttcaaaagattataaatcataacaaatgtgttgcacttattt 553  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||    
T  5569189 agtcaacttcaaaagctaataaatcataacaaatgtgttgcacttattt 5569237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 207 - 356
Target Start/End: Original strand, 25818999 - 25819149
Alignment:
Q  207 cggatctagacattcggtatatgcgtaactaaaatatcagagaaaaaata--atgcaaattatattaaaaataagaattaacattgtttgatgtaataca 304  Q
    |||||||||||||| |||| ||| |   ||||||| ||| ||||||||||  ||| ||| ||||||||||||| ||| |||||||||||||   |||||     
T  25818999 cggatctagacatttggtacatgtggggctaaaatttcaaagaaaaaatataatgtaaactatattaaaaataggaaataacattgtttgaaacaatac- 25819097  T
Q  305 attacaataaaaactgtctcttatccaattgttgaaaacgtgctaaaataac 356  Q
    ||||| || |||| |||||| |||||| ||||||||||   |||||||||||    
T  25819098 attacgatgaaaattgtctcctatccatttgttgaaaataagctaaaataac 25819149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 235 - 353
Target Start/End: Original strand, 26459644 - 26459761
Alignment:
Q  235 ctaaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaatt 334  Q
    ||||||| ||| ||||| ||| |||||||  ||||||||||||||||  |||||||||||||  ||||| |||||||| ||||  || || |||||| ||    
T  26459644 ctaaaatttcaaagaaacaattatgcaaaccatattaaaaataagaaagaacattgtttgatacaatac-attacaatgaaaatcgtgtcctatccattt 26459742  T
Q  335 gttgaaaacgtgctaaaat 353  Q
    |||||||| | ||||||||    
T  26459743 gttgaaaatgagctaaaat 26459761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 461 - 553
Target Start/End: Original strand, 39509262 - 39509359
Alignment:
Q  461 tagctgaaaaaacatgtttaacacttgcaattgctactcacaag-----agtcaacttcaaaagattataaatcataacaaatgtgttgcacttattt 553  Q
    ||||| |||||||| ||| |||||||| ||||| ||| ||||||     || |||||||||||| ||||||||| |||||||| ||||||||||||||    
T  39509262 tagctcaaaaaacaagttcaacacttgtaattgttacccacaagggcaaagccaacttcaaaagtttataaatcgtaacaaatatgttgcacttattt 39509359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 464 - 551
Target Start/End: Original strand, 36745122 - 36745214
Alignment:
Q  464 ctgaaaaaacatgtttaacacttgcaattgctactcacaag-----agtcaacttcaaaagattataaatcataacaaatgtgttgcacttat 551  Q
    ||||||||||| ||| |||||||||| ||| |||  |||||     ||||||||||||||| ||||||| |||| ||||||||||||||||||    
T  36745122 ctgaaaaaacacgttcaacacttgcagttgttaccgacaagagcaaagtcaacttcaaaagtttataaaccatatcaaatgtgttgcacttat 36745214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 312
Target Start/End: Complemental strand, 35676394 - 35676332
Alignment:
Q  250 aaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaat 312  Q
    |||||||||||||| ||||||||||||||||| ||| ||||| ||||| || | |||||||||    
T  35676394 aaaaataatgcaaactatattaaaaataagaaataatattgtatgatgcaaaataattacaat 35676332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 249 - 317
Target Start/End: Original strand, 43144527 - 43144594
Alignment:
Q  249 aaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaa 317  Q
    ||||||| ||||||| ||||||| ||||||||| ||||||||||||||  ||||| |||||||| ||||    
T  43144527 aaaaaattatgcaaactatattataaataagaaataacattgtttgatacaatac-attacaatgaaaa 43144594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 554
Target Start/End: Original strand, 43144743 - 43144841
Alignment:
Q  461 tagctgaaaaaacatgtttaacacttgcaattgctactcacaagag-----tcaacttcaaaagattataaatcataacaaatgtgttgcacttatttg 554  Q
    |||||||||||| | ||| |||||||||| |||||||   ||||||     ||||||||||||| ||||||| |||| |||||||||| || |||||||    
T  43144743 tagctgaaaaaatacgttcaacacttgcagttgctaccggcaagagcaaagtcaacttcaaaagtttataaaccatagcaaatgtgttacatttatttg 43144841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 296
Target Start/End: Original strand, 5069805 - 5069854
Alignment:
Q  247 agaaaaaataatgcaaattatattaaaaataagaattaacattgtttgat 296  Q
    ||||| ||||||| ||| ||||||||||||||||| ||| ||||||||||    
T  5069805 agaaacaataatgtaaactatattaaaaataagaagtaatattgtttgat 5069854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 7e-29; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 253 - 554
Target Start/End: Original strand, 25232916 - 25233226
Alignment:
Q  253 aataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaattgttgaaaacgtgctaaaa 352  Q
    ||||||||||| ||||| ||||||||||| ||||||||||||||  |||| ||||||||| |||| |||||| |||||| |||||||||| | | |||||    
T  25232916 aataatgcaaactatatgaaaaataagaaataacattgtttgatacaatataattacaatgaaaattgtctcctatccatttgttgaaaatgagttaaaa 25233015  T
Q  353 taacaatattgctaattttttnnnnnnnnncatttatttctataaaagttacaaga----gatttagcaactagacactta-ttttgttacata-ttgaa 446  Q
    |||||    |||||||||||          ||||| ||| |||| || ||||||||     ||||||| |||     |||| |||||||||||| || |     
T  25233016 taacagcgctgctaattttt---aaaagaacatttctttttatataaattacaagacgatcatttagccactgattgcttatttttgttacatagttaac 25233112  T
Q  447 tgttca-aacttttttagctgaaaaaacatgtttaacacttgcaattgctactcacaag-----agtcaacttcaaaagattataaatcataacaaatgt 540  Q
    |||||| ||||||| |||||||||||||| ||| |||||||||| ||||||| ||||||     || ||| |||||||| ||||||||||||||||||||    
T  25233113 tgttcacaacttttgtagctgaaaaaacacgttcaacacttgcacttgctacccacaagagcaaagccaatttcaaaagcttataaatcataacaaatgt 25233212  T
Q  541 gttgcacttatttg 554  Q
    ||||||||||||||    
T  25233213 gttgcacttatttg 25233226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 265 - 372
Target Start/End: Original strand, 26787258 - 26787365
Alignment:
Q  265 tatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaattgttgaaaacgtgctaaaataacaatattgc 364  Q
    ||||||||| ||||||| ||||||||||| ||| |||||||||||||| |||| ||| |||||| || |||||||||||| | |||||||| |  || ||    
T  26787258 tatattaaagataagaaataacattgtttaatgcaatacaattacaatcaaaattgtgtcttattcatttgttgaaaacgagataaaataatagcatcgc 26787357  T
Q  365 taattttt 372  Q
    ||||||||    
T  26787358 taattttt 26787365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 270 - 369
Target Start/End: Original strand, 39785484 - 39785583
Alignment:
Q  270 taaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaattgttgaaaacgtgctaaaataacaatattgctaatt 369  Q
    |||||||||||| ||||||||||||||| |||||||||||||| ||||  ||||  |||||| ||||| |||| | ||||||||||||| |||| |||||    
T  39785484 taaaaataagaaataacattgtttgatgcaatacaattacaatgaaaatcgtctactatccatttgttaaaaatgagctaaaataacaacattgataatt 39785583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 424 - 550
Target Start/End: Original strand, 26787418 - 26787552
Alignment:
Q  424 cacttattttgttacata-ttgaatgttca-aacttttttagctgaaaaaacatgtttaacacttgcaattgctactcacaagag-----tcaacttc-a 515  Q
    |||||||||||||||||| |||| |||||| ||||||| ||| ||| ||||||||||||||||||||||||| |||  | || ||     |||||||| |    
T  26787418 cacttattttgttacataattgattgttcacaacttttgtagatgacaaaacatgtttaacacttgcaattgataccgataaaagcaaaatcaacttcaa 26787517  T
Q  516 aaagattataaatcataacaaatgtgttgcactta 550  Q
    |||| ||||||| |||||||||| |||||||||||    
T  26787518 aaagtttataaaccataacaaatatgttgcactta 26787552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 505 - 554
Target Start/End: Complemental strand, 1247908 - 1247859
Alignment:
Q  505 agtcaacttcaaaagattataaatcataacaaatgtgttgcacttatttg 554  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  1247908 agtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttg 1247859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 467 - 554
Target Start/End: Complemental strand, 2945314 - 2945222
Alignment:
Q  467 aaaaaacatgtttaacacttgcaattgctactcacaagag-----tcaacttcaaaagattataaatcataacaaatgtgttgcacttatttg 554  Q
    |||||||| ||| |||||||||| |||||||  |||||||     ||||||||||||| |||||||||||| ||||||||||||| |||||||    
T  2945314 aaaaaacacgttcaacacttgcagttgctaccgacaagagcaaagtcaacttcaaaagtttataaatcatagcaaatgtgttgcatttatttg 2945222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 247 - 311
Target Start/End: Original strand, 49143969 - 49144033
Alignment:
Q  247 agaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaa 311  Q
    |||||||||||| |||| ||||||||||||||||| |||||||||||| || | |||||||||||    
T  49143969 agaaaaaataatacaaactatattaaaaataagaaataacattgtttggtgcattacaattacaa 49144033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 508 - 554
Target Start/End: Original strand, 24658654 - 24658700
Alignment:
Q  508 caacttcaaaagattataaatcataacaaatgtgttgcacttatttg 554  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||    
T  24658654 caacttcaaaagtttataaatcatagcaaatgtgttgcacttatttg 24658700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 247 - 342
Target Start/End: Complemental strand, 30074772 - 30074676
Alignment:
Q  247 agaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaat-aaaaact-gtctcttatccaattgttgaaaa 342  Q
    |||||| ||||||||||||||||||||||||||||  ||||| |||||||  ||||| |||||||| |||| || ||||| |||||| ||||||||||    
T  30074772 agaaaagataatgcaaattatattaaaaataagaaacaacatcgtttgatacaatac-attacaatcaaaatctcgtctcctatccatttgttgaaaa 30074676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 505 - 554
Target Start/End: Complemental strand, 38300252 - 38300203
Alignment:
Q  505 agtcaacttcaaaagattataaatcataacaaatgtgttgcacttatttg 554  Q
    ||||||||||||||| ||||||| |||| |||||||||||||||||||||    
T  38300252 agtcaacttcaaaagtttataaaccatagcaaatgtgttgcacttatttg 38300203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 268 - 355
Target Start/End: Complemental strand, 26824559 - 26824472
Alignment:
Q  268 attaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaattgttgaaaacgtgctaaaataa 355  Q
    |||||||||||||| ||| ||| ||||||| |||||||||||||| ||||  ||||| |||| | |||||||||| | | ||||||||    
T  26824559 attaaaaataagaaataatattatttgatgcaatacaattacaatgaaaatcgtctcctatcgatttgttgaaaatgaggtaaaataa 26824472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 456 - 550
Target Start/End: Original strand, 33597994 - 33598093
Alignment:
Q  456 ttttttagctgaaaaaacatgtttaacacttgcaattgctactcacaagagt-----caacttcaaaagattataaatcataacaaatgtgttgcactta 550  Q
    |||| ||||| ||||||||| || |||  ||||||||||||| ||||||||      ||| || ||||| ||||||||||||||||||||||||||||||    
T  33597994 ttttgtagctaaaaaaacatattcaactattgcaattgctacccacaagagcaaagccaaatttaaaagcttataaatcataacaaatgtgttgcactta 33598093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 508 - 554
Target Start/End: Original strand, 1691881 - 1691927
Alignment:
Q  508 caacttcaaaagattataaatcataacaaatgtgttgcacttatttg 554  Q
    |||||||||||| ||||||| |||| |||||||||||||||||||||    
T  1691881 caacttcaaaagtttataaaccatagcaaatgtgttgcacttatttg 1691927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 329
Target Start/End: Complemental strand, 16841114 - 16841052
Alignment:
Q  267 tattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatc 329  Q
    ||||||||||||||| ||| ||| ||||||| |||||||||||||| |||| |||||| ||||    
T  16841114 tattaaaaataagaaataatattttttgatgcaatacaattacaatgaaaattgtctcctatc 16841052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 508 - 554
Target Start/End: Original strand, 27080644 - 27080690
Alignment:
Q  508 caacttcaaaagattataaatcataacaaatgtgttgcacttatttg 554  Q
    |||||||||||  |||||||||||| |||||||||||||||||||||    
T  27080644 caacttcaaaaacttataaatcatagcaaatgtgttgcacttatttg 27080690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 508 - 554
Target Start/End: Complemental strand, 27197657 - 27197611
Alignment:
Q  508 caacttcaaaagattataaatcataacaaatgtgttgcacttatttg 554  Q
    |||||||||||  |||||||||||| |||||||||||||||||||||    
T  27197657 caacttcaaaaacttataaatcatagcaaatgtgttgcacttatttg 27197611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 40717004 - 40716946
Alignment:
Q  299 aatacaattacaataaaaactgtctcttatccaattgttgaaaacgtgctaaaataaca 357  Q
    ||||||||||||||||||| |||||| |||||| |||||||||| | | ||||||||||    
T  40717004 aatacaattacaataaaaattgtctcatatccatttgttgaaaatgaggtaaaataaca 40716946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 236 - 293
Target Start/End: Complemental strand, 34346960 - 34346903
Alignment:
Q  236 taaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgttt 293  Q
    |||||| ||| ||||| ||||||||||| || |||||||||||||| |||||||||||    
T  34346960 taaaatttcaaagaaacaataatgcaaactacattaaaaataagaaataacattgttt 34346903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 267 - 369
Target Start/End: Complemental strand, 2945519 - 2945416
Alignment:
Q  267 tattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaa-ct-gtctcttatccaattgttgaaaacgtgctaaaataacaatattgc 364  Q
    ||||||||||||||| ||||||||||||||  ||||| ||||||||||||| || ||||| |||| | |||||||||| |  ||||||| |||  |||||    
T  2945519 tattaaaaataagaaataacattgtttgatacaatac-attacaataaaaatctcgtctcctatctatttgttgaaaatgacctaaaatgacatcattgc 2945421  T
Q  365 taatt 369  Q
    |||||    
T  2945420 taatt 2945416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 317
Target Start/End: Complemental strand, 13094692 - 13094632
Alignment:
Q  257 atgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaa 317  Q
    |||||||||| | |||||||||||| |||||||||| |||| || ||||||||||| ||||    
T  13094692 atgcaaattaaactaaaaataagaaataacattgttagatgcaacacaattacaattaaaa 13094632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 507 - 554
Target Start/End: Original strand, 25617890 - 25617937
Alignment:
Q  507 tcaacttcaaaagattataaatcataacaaatgtgttgcacttatttg 554  Q
    ||||||||||||| |||||||||||| |||||||||| || |||||||    
T  25617890 tcaacttcaaaagcttataaatcatagcaaatgtgttacatttatttg 25617937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 294
Target Start/End: Complemental strand, 32221975 - 32221932
Alignment:
Q  251 aaaataatgcaaattatattaaaaataagaattaacattgtttg 294  Q
    ||||||||| | ||||||||||||||||||| ||||||||||||    
T  32221975 aaaataatgtatattatattaaaaataagaaataacattgtttg 32221932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 296
Target Start/End: Complemental strand, 33941763 - 33941720
Alignment:
Q  253 aataatgcaaattatattaaaaataagaattaacattgtttgat 296  Q
    |||||| |||| ||||||||||||||||| ||||||||||||||    
T  33941763 aataatacaaactatattaaaaataagaaataacattgtttgat 33941720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 453 - 554
Target Start/End: Complemental strand, 40716847 - 40716740
Alignment:
Q  453 aacttttttagctgaaaaaacatgtttaacacttgcaattgctactcac-----aagagtcaacttcaaaaga-ttataaatcataacaaatgtgttgca 546  Q
    ||||||| ||||| |||||| |||||||||| ||||||||||||| |||     || ||  ||||| |||| | ||||||| ||||| ||||||||||||    
T  40716847 aacttttatagctaaaaaaatatgtttaacatttgcaattgctacccacgggagaaaagctaactttaaaaaacttataaaccataataaatgtgttgca 40716748  T
Q  547 cttatttg 554  Q
    ||||||||    
T  40716747 cttatttg 40716740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 247 - 281
Target Start/End: Original strand, 7899448 - 7899482
Alignment:
Q  247 agaaaaaataatgcaaattatattaaaaataagaa 281  Q
    ||||| |||||||||||||||||||||||||||||    
T  7899448 agaaacaataatgcaaattatattaaaaataagaa 7899482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 512 - 554
Target Start/End: Original strand, 8062581 - 8062623
Alignment:
Q  512 ttcaaaagattataaatcataacaaatgtgttgcacttatttg 554  Q
    |||||||  |||||||||||| |||||||||||||||||||||    
T  8062581 ttcaaaaacttataaatcatagcaaatgtgttgcacttatttg 8062623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 247 - 281
Target Start/End: Original strand, 26050128 - 26050162
Alignment:
Q  247 agaaaaaataatgcaaattatattaaaaataagaa 281  Q
    ||||| |||||||||||||||||||||||||||||    
T  26050128 agaaacaataatgcaaattatattaaaaataagaa 26050162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 247 - 281
Target Start/End: Original strand, 26059487 - 26059521
Alignment:
Q  247 agaaaaaataatgcaaattatattaaaaataagaa 281  Q
    ||||| |||||||||||||||||||||||||||||    
T  26059487 agaaacaataatgcaaattatattaaaaataagaa 26059521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 508 - 554
Target Start/End: Complemental strand, 33941511 - 33941465
Alignment:
Q  508 caacttcaaaagattataaatcataacaaatgtgttgcacttatttg 554  Q
    |||||||||||| ||||||  |||| |||||||||||||||||||||    
T  33941511 caacttcaaaagtttataatccatagcaaatgtgttgcacttatttg 33941465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 554
Target Start/End: Original strand, 38838346 - 38838391
Alignment:
Q  509 aacttcaaaagattataaatcataacaaatgtgttgcacttatttg 554  Q
    ||||||||||| |||||||||||  |||||||||||| ||||||||    
T  38838346 aacttcaaaagcttataaatcattgcaaatgtgttgcgcttatttg 38838391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 261 - 317
Target Start/End: Complemental strand, 33255068 - 33255012
Alignment:
Q  261 aaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaa 317  Q
    |||||||| ||||||||| || ||||||||||||||  |||||| ||| ||||||||    
T  33255068 aaattatactaaaaataataaataacattgtttgattcaatacatttaaaataaaaa 33255012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 554
Target Start/End: Complemental strand, 46090063 - 46090019
Alignment:
Q  510 acttcaaaagattataaatcataacaaatgtgttgcacttatttg 554  Q
    ||||| |||| ||||||| |||| |||||||||||||||||||||    
T  46090063 acttccaaagcttataaaccatagcaaatgtgttgcacttatttg 46090019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 214 - 294
Target Start/End: Complemental strand, 46090370 - 46090290
Alignment:
Q  214 agacattcggtatatgcgtaactaaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttg 294  Q
    ||||||| | |||||| |||||||| ||  || ||||| ||| || |||| |||||||||||||| || ||||||||||||    
T  46090370 agacatttgatatatgtgtaactaatattacaaagaaacaatgatacaaactatattaaaaataaaaaataacattgtttg 46090290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 204 - 342
Target Start/End: Original strand, 30136505 - 30136642
Alignment:
Q  204 agacggatctagacattcggtatatgcgtaactaaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatac 303  Q
    |||||||||||||||||||||||||| || |||||||| | | | |||||||||||||||  |||| ||||||||||| ||||||||||||||  |||||    
T  30136505 agacggatctagacattcggtatatgtgtgactaaaattttaaa-aaaaaataatgcaaacaatatgaaaaataagaaataacattgtttgatacaatac 30136603  T
Q  304 aattacaataaaaactgtctcttatccaattgttgaaaa 342  Q
    |||| |||| ||||  ||||| |||||| ||||||||||    
T  30136604 aatttcaatgaaaatggtctcctatccatttgttgaaaa 30136642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 204 - 342
Target Start/End: Original strand, 30142634 - 30142771
Alignment:
Q  204 agacggatctagacattcggtatatgcgtaactaaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatac 303  Q
    |||||||||||||||||||||||||| || |||||||| | | | |||||||||||||||  |||| ||||||||||| ||||||||||||||  |||||    
T  30142634 agacggatctagacattcggtatatgtgtgactaaaattttaaa-aaaaaataatgcaaacaatatgaaaaataagaaataacattgtttgatacaatac 30142732  T
Q  304 aattacaataaaaactgtctcttatccaattgttgaaaa 342  Q
    |||| |||| ||||  ||||| |||||| ||||||||||    
T  30142733 aatttcaatgaaaatggtctcctatccatttgttgaaaa 30142771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 204 - 342
Target Start/End: Original strand, 30146056 - 30146193
Alignment:
Q  204 agacggatctagacattcggtatatgcgtaactaaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatac 303  Q
    |||||||||||||||||||||||||| || |||||||| | | | |||||||||||||||  |||| ||||||||||| ||||||||||||||  |||||    
T  30146056 agacggatctagacattcggtatatgtgtgactaaaattttaaa-aaaaaataatgcaaacaatatgaaaaataagaaataacattgtttgatacaatac 30146154  T
Q  304 aattacaataaaaactgtctcttatccaattgttgaaaa 342  Q
    |||| |||| ||||  ||||| |||||| ||||||||||    
T  30146155 aatttcaatgaaaatggtctcctatccatttgttgaaaa 30146193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 205 - 342
Target Start/End: Complemental strand, 6714552 - 6714416
Alignment:
Q  205 gacggatctagacattcggtatatgcgtaactaaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaataca 304  Q
    |||||||||| |||||||||| ||  || |||||||| | | ||||| |||||||  |||||||||||||||||||| ||||| | ||||||||||||||    
T  6714552 gacggatctaaacattcggtagatatgtgactaaaattttaaagaaataataatgttaattatattaaaaataagaaataaca-tatttgatgtaataca 6714454  T
Q  305 attacaataaaaactgtctcttatccaattgttgaaaa 342  Q
    |||||||| |||| |||||| |||| | ||||||||||    
T  6714453 attacaatgaaaattgtctcatatctatttgttgaaaa 6714416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 247 - 369
Target Start/End: Original strand, 23778219 - 23778345
Alignment:
Q  247 agaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaataca----attacaataaaaactgtctcttatccaattgttgaaaa 342  Q
    |||||||||||| |||| ||||||||||||||||| ||||||||||||||  ||||||    |||||||||||||  |||||||||||| ||||||||||    
T  23778219 agaaaaaataatacaaactatattaaaaataagaaataacattgtttgatacaatacattacattacaataaaaatggtctcttatccatttgttgaaaa 23778318  T
Q  343 cgtgctaaaataacaatattgctaatt 369  Q
     | |||||||| |||  ||||||||||    
T  23778319 tgagctaaaatgacatcattgctaatt 23778345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 453 - 554
Target Start/End: Complemental strand, 35502460 - 35502354
Alignment:
Q  453 aacttttttagctgaaaaaacatgtttaacacttgcaattgctactcacaagag-----tcaacttcaaaagattataaatcataacaaatgtgttgcac 547  Q
    ||||||| |||||||||| |||| || |||||||||||||||||| ||| ||||     ||||||||||||| ||||||||||||||||||| |||||||    
T  35502460 aacttttatagctgaaaatacatattcaacacttgcaattgctacccacgagagcaaaatcaacttcaaaagcttataaatcataacaaatgggttgcac 35502361  T
Q  548 ttatttg 554  Q
    |||||||    
T  35502360 ttatttg 35502354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 208 - 342
Target Start/End: Original strand, 24309801 - 24309934
Alignment:
Q  208 ggatctagacattcggtatatgcgtaactaaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaatt 307  Q
    ||||| |||| || |||| ||||| | ||||||| ||| ||||| ||||||||||| ||||||||||||||||| ||| ||||||||||  ||||| |||    
T  24309801 ggatccagactttaggtacatgcgaagctaaaatttcaaagaaacaataatgcaaactatattaaaaataagaaataatattgtttgatacaatac-att 24309899  T
Q  308 acaataaaaactgtctcttatccaattgttgaaaa 342  Q
    ||||| ||||  ||||| |||||| ||||||||||    
T  24309900 acaatgaaaatcgtctcctatccatttgttgaaaa 24309934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 424 - 554
Target Start/End: Original strand, 30136728 - 30136862
Alignment:
Q  424 cacttattttgttacata-ttgaatgttcaaacttttt-tagctgaaaaaacatgtttaacacttgcaattgctactcacaagagtcaact---tcaaaa 518  Q
    ||||||||||||| |||| |||| |||||| | ||||| |||||||||||||| ||| |||||||||||||||||| ||||| || |||||   | ||||    
T  30136728 cacttattttgttgcatagttgattgttcacaatttttgtagctgaaaaaacacgttcaacacttgcaattgctacccacaatag-caactaacttaaaa 30136826  T
Q  519 gattataaatcataacaaatgtgttgcacttatttg 554  Q
    | ||||||| |||||||||| |||||||||||||||    
T  30136827 gcttataaaccataacaaatatgttgcacttatttg 30136862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 424 - 554
Target Start/End: Original strand, 30142857 - 30142991
Alignment:
Q  424 cacttattttgttacata-ttgaatgttcaaacttttt-tagctgaaaaaacatgtttaacacttgcaattgctactcacaagagtcaact---tcaaaa 518  Q
    ||||||||||||| |||| |||| |||||| | ||||| |||||||||||||| ||| |||||||||||||||||| ||||| || |||||   | ||||    
T  30142857 cacttattttgttgcatagttgattgttcacaatttttgtagctgaaaaaacacgttcaacacttgcaattgctacccacaatag-caactaacttaaaa 30142955  T
Q  519 gattataaatcataacaaatgtgttgcacttatttg 554  Q
    | ||||||| |||||||||| |||||||||||||||    
T  30142956 gcttataaaccataacaaatatgttgcacttatttg 30142991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 424 - 554
Target Start/End: Original strand, 30146279 - 30146413
Alignment:
Q  424 cacttattttgttacata-ttgaatgttcaaacttttt-tagctgaaaaaacatgtttaacacttgcaattgctactcacaagagtcaact---tcaaaa 518  Q
    ||||||||||||| |||| |||| |||||| | ||||| |||||||||||||| ||| |||||||||||||||||| ||||| || |||||   | ||||    
T  30146279 cacttattttgttgcatagttgattgttcacaatttttgtagctgaaaaaacacgttcaacacttgcaattgctacccacaatag-caactaacttaaaa 30146377  T
Q  519 gattataaatcataacaaatgtgttgcacttatttg 554  Q
    | ||||||| |||||||||| |||||||||||||||    
T  30146378 gcttataaaccataacaaatatgttgcacttatttg 30146413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 253 - 342
Target Start/End: Complemental strand, 26285957 - 26285869
Alignment:
Q  253 aataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaattgttgaaaa 342  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||  ||||| |||||||| ||||  || || |||||| ||||||||||    
T  26285957 aataatgcaaactatattaaaaataagaaataacattgtttgatacaatac-attacaatgaaaatcgtttcctatccatttgttgaaaa 26285869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 261 - 357
Target Start/End: Complemental strand, 396023 - 395927
Alignment:
Q  261 aaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaattgttgaaaacgtgctaaaataaca 357  Q
    |||||||| |||||||||||| ||||||||||||||  |||||| |||| || |||| |||||   ||||| |||||||||| | ||||||||||||    
T  396023 aaattatactaaaaataagaaataacattgtttgatacaatacatttacgatgaaaattgtctaccatccatttgttgaaaatgagctaaaataaca 395927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 464 - 554
Target Start/End: Original strand, 24310059 - 24310154
Alignment:
Q  464 ctgaaaaaacatgtttaacacttgcaattgctactcacaag-----agtcaacttcaaaagattataaatcataacaaatgtgttgcacttatttg 554  Q
    ||||||||||| ||| |||||||||| |||||||  |||||     ||||||||||||||| ||||||| |||| ||||||||| |||||||||||    
T  24310059 ctgaaaaaacacgttcaacacttgcagttgctaccaacaagagcaaagtcaacttcaaaagtttataaaccatagcaaatgtgtcgcacttatttg 24310154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 235 - 353
Target Start/End: Original strand, 7856449 - 7856568
Alignment:
Q  235 ctaaaatatcagagaaaaaataatgcaaattatattaaaaataagaat--taacattgtttgatgtaatacaattacaataaaaactgtctcttatccaa 332  Q
    ||||||| ||| ||||| |||||||||||||||||||||||||| |||   || ||||||||||  ||||| |||| ||||||||  ||||| ||||||     
T  7856449 ctaaaatttcaaagaaacaataatgcaaattatattaaaaataaaaataaaaatattgtttgatacaatac-attataataaaaatcgtctcctatccat 7856547  T
Q  333 ttgttgaaaacgtgctaaaat 353  Q
    ||||| |||| | ||||||||    
T  7856548 ttgttaaaaatgagctaaaat 7856568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 253 - 317
Target Start/End: Complemental strand, 25032237 - 25032174
Alignment:
Q  253 aataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaa 317  Q
    |||||||||||||| |||||||||||||| ||||||||||||||  ||||| |||||||| ||||    
T  25032237 aataatgcaaattacattaaaaataagaaataacattgtttgatacaatac-attacaatgaaaa 25032174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 280
Target Start/End: Complemental strand, 35504286 - 35504214
Alignment:
Q  208 ggatctagacattcggtatatgcgtaactaaaatatcagagaaaaaataatgcaaattatattaaaaataaga 280  Q
    ||||||||| ||| ||| |||| ||  ||||||| | | ||||||||||||||||||||||||||||||||||    
T  35504286 ggatctagatatttggtgtatgtgtggctaaaatttaaaagaaaaaataatgcaaattatattaaaaataaga 35504214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 296
Target Start/End: Original strand, 36475420 - 36475480
Alignment:
Q  236 taaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgat 296  Q
    |||||| ||| ||||| ||||| ||||| ||||||||||||||||| ||||||||||||||    
T  36475420 taaaatttcaaagaaacaataacgcaaactatattaaaaataagaaataacattgtttgat 36475480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 505 - 554
Target Start/End: Complemental strand, 26285698 - 26285649
Alignment:
Q  505 agtcaacttcaaaagattataaatcataacaaatgtgttgcacttatttg 554  Q
    ||||||||||||||| ||||||| ||||| |||| |||||||||||||||    
T  26285698 agtcaacttcaaaagcttataaaccataataaatttgttgcacttatttg 26285649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 253 - 342
Target Start/End: Complemental strand, 36478319 - 36478231
Alignment:
Q  253 aataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaattgttgaaaa 342  Q
    |||| |||||| ||||||||||||||||| ||| ||||||||||  |||||  ||||||| |||| ||||| | ||||| ||||||||||    
T  36478319 aatattgcaaactatattaaaaataagaaataatattgtttgatacaatac-gttacaattaaaattgtctttgatccatttgttgaaaa 36478231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 509 - 554
Target Start/End: Original strand, 41897724 - 41897769
Alignment:
Q  509 aacttcaaaagattataaatcataacaaatgtgttgcacttatttg 554  Q
    ||||||||||| |||||||| ||| |||||||||||||||||||||    
T  41897724 aacttcaaaagcttataaataatagcaaatgtgttgcacttatttg 41897769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 247 - 281
Target Start/End: Complemental strand, 19832068 - 19832034
Alignment:
Q  247 agaaaaaataatgcaaattatattaaaaataagaa 281  Q
    ||||| |||||||||||||||||||||||||||||    
T  19832068 agaaacaataatgcaaattatattaaaaataagaa 19832034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 508 - 554
Target Start/End: Original strand, 23778489 - 23778535
Alignment:
Q  508 caacttcaaaagattataaatcataacaaatgtgttgcacttatttg 554  Q
    |||||||||||| ||||||| |||| ||||||||||||| |||||||    
T  23778489 caacttcaaaagtttataaaccatagcaaatgtgttgcatttatttg 23778535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 508 - 554
Target Start/End: Original strand, 38573208 - 38573254
Alignment:
Q  508 caacttcaaaagattataaatcataacaaatgtgttgcacttatttg 554  Q
    |||||||||||| |||||||  ||| |||||||||||||||||||||    
T  38573208 caacttcaaaagtttataaacaatagcaaatgtgttgcacttatttg 38573254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 253 - 281
Target Start/End: Complemental strand, 19832014 - 19831986
Alignment:
Q  253 aataatgcaaattatattaaaaataagaa 281  Q
    |||||||||||||||||||||||||||||    
T  19832014 aataatgcaaattatattaaaaataagaa 19831986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 4e-24; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 203 - 372
Target Start/End: Complemental strand, 1975439 - 1975270
Alignment:
Q  203 aagacggatctagacattcggtatatgcgtaactaaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaata 302  Q
    ||||||||||||||||||||||||||| ||   |||||| | | ||||||||||||| ||| |||||||||||||| || |||||||| |||||  ||||    
T  1975439 aagacggatctagacattcggtatatgtgtggttaaaattttaaagaaaaaataatgtaaactatattaaaaataataaataacattggttgattcaata 1975340  T
Q  303 caattacaataaaaactgtctcttatccaattgttgaaaacgtgctaaaataacaatattgctaattttt 372  Q
    |||| ||||| |||| |||||| | || | ||| |||||| | | |||||||| |  |||||||||||||    
T  1975339 caataacaatgaaaattgtctcatgtctatttgatgaaaatgagttaaaataatagcattgctaattttt 1975270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 235 - 342
Target Start/End: Complemental strand, 16461783 - 16461677
Alignment:
Q  235 ctaaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaatt 334  Q
    ||||||| ||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||||  ||||  |||||||| |||| |||||| ||| || ||    
T  16461783 ctaaaatttcaaagaaacaataatgcaaactatattaaaaataagaaataacattgtttgatacaata-tattacaatgaaaattgtctcctattcattt 16461685  T
Q  335 gttgaaaa 342  Q
    ||||||||    
T  16461684 gttgaaaa 16461677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 257 - 351
Target Start/End: Complemental strand, 8150909 - 8150815
Alignment:
Q  257 atgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaattgttgaaaacgtgctaaa 351  Q
    ||||| |||||| ||| || ||||||||||||||||||||| |||||||||||||||||||  ||||  |||||| |||||||||| | ||||||    
T  8150909 atgcagattatactaacaacaagaattaacattgtttgatgcaatacaattacaataaaaatcgtctactatccatttgttgaaaatgagctaaa 8150815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 257 - 356
Target Start/End: Original strand, 30702669 - 30702768
Alignment:
Q  257 atgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaattgttgaaaacgtgctaaaataac 356  Q
    |||||||||||| |||||||||||| ||||||||||||||  |||||||| || |||||||  ||||  |||||| |||| ||||| | |||||||||||    
T  30702669 atgcaaattatactaaaaataagaaataacattgtttgatacaatacaatgacgataaaaatcgtctactatccagttgtcgaaaatgagctaaaataac 30702768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 251 - 317
Target Start/End: Complemental strand, 2920023 - 2919958
Alignment:
Q  251 aaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaa 317  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||  ||||| |||||||| ||||    
T  2920023 aaaataatgcaaactatattaaaaataagaaataacattgtttgatacaatac-attacaatgaaaa 2919958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 465 - 554
Target Start/End: Complemental strand, 14607685 - 14607591
Alignment:
Q  465 tgaaaaaacatgtttaacacttgcaattgctactcacaagag-----tcaacttcaaaagattataaatcataacaaatgtgttgcacttatttg 554  Q
    |||||||||| |||||||||||||| |||||||   ||||||     ||||||||||||| ||||||| ||||||  ||||||||||||||||||    
T  14607685 tgaaaaaacacgtttaacacttgcagttgctaccgtcaagagcaaagtcaacttcaaaagtttataaaccataacttatgtgttgcacttatttg 14607591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 505 - 554
Target Start/End: Original strand, 6689425 - 6689474
Alignment:
Q  505 agtcaacttcaaaagattataaatcataacaaatgtgttgcacttatttg 554  Q
    ||||||||||||||| |||||||||||| ||||||||||| |||||||||    
T  6689425 agtcaacttcaaaagcttataaatcatagcaaatgtgttgtacttatttg 6689474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 554
Target Start/End: Original strand, 21883429 - 21883535
Alignment:
Q  453 aacttttttagctgaaaaaacatgtttaacacttgcaattgctactcacaagagt-----caacttcaaaagattataaatcataacaaatgtgttgcac 547  Q
    ||||||| ||| |||||||||| ||| |||||||||| |||||||   ||||||      |||||||||||| ||||||| |||| ||||||||||| ||    
T  21883429 aacttttatagttgaaaaaacacgttcaacacttgcagttgctaccggcaagagcaaagccaacttcaaaagtttataaaccatagcaaatgtgttgtac 21883528  T
Q  548 ttatttg 554  Q
    |||||||    
T  21883529 ttatttg 21883535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 508 - 554
Target Start/End: Complemental strand, 2919915 - 2919869
Alignment:
Q  508 caacttcaaaagattataaatcataacaaatgtgttgcacttatttg 554  Q
    |||||||||||| | ||||| |||||||||||||||||| |||||||    
T  2919915 caacttcaaaagttaataaaccataacaaatgtgttgcatttatttg 2919869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 205 - 275
Target Start/End: Original strand, 6689130 - 6689200
Alignment:
Q  205 gacggatctagacattcggtatatgcgtaactaaaatatcagagaaaaaataatgcaaattatattaaaaa 275  Q
    |||||||||||| ||| || |||||  | ||||||||  || ||||| |||||||||||||||||||||||    
T  6689130 gacggatctagatatttgggatatgtttgactaaaattacaaagaaacaataatgcaaattatattaaaaa 6689200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 19267109 - 19267059
Alignment:
Q  252 aaataatgcaaattatattaaaaataagaattaacattgtttgatgtaata 302  Q
    |||||||| ||| ||||||||||||||||| ||||||| |||||| |||||    
T  19267109 aaataatgtaaactatattaaaaataagaaataacattatttgatataata 19267059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 260 - 306
Target Start/End: Original strand, 30705270 - 30705316
Alignment:
Q  260 caaattatattaaaaataagaattaacattgtttgatgtaatacaat 306  Q
    ||||||||| |||||||||||| ||||||||||||||  ||||||||    
T  30705270 caaattatactaaaaataagaaataacattgtttgatacaatacaat 30705316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 357
Target Start/End: Complemental strand, 14607867 - 14607795
Alignment:
Q  284 aacattgtttgatgtaatacaattacaataaaaactgtctcttatccaattgttgaaaacgtgctaaaataaca 357  Q
    |||||||||||||  |||||| ||||||| |||| | |||| |||||| |||||||||| | ||||||||||||    
T  14607867 aacattgtttgatacaataca-ttacaatgaaaattttctcctatccatttgttgaaaatgagctaaaataaca 14607795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 208 - 356
Target Start/End: Original strand, 1111924 - 1112071
Alignment:
Q  208 ggatctagacattcggtatatgcgtaactaaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaatt 307  Q
    ||||||||||||||  |||||  ||  ||||||| |||  |||| ||||||||||| | |||||| |||||||| |||||||||||||||  ||||||||    
T  1111924 ggatctagacattcaatatatatgtggctaaaatttcaatgaaataataatgcaaact-tattaataataagaaataacattgtttgatgcgatacaatt 1112022  T
Q  308 acaataaaaactgtctcttatccaattgttgaaaacgtgctaaaataac 356  Q
    ||||| |||| ||||||||||||| |||||||||| |  ||||||||||    
T  1112023 acaatcaaaattgtctcttatccatttgttgaaaatgatctaaaataac 1112071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 251 - 369
Target Start/End: Original strand, 2158598 - 2158715
Alignment:
Q  251 aaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaattgttgaaaacgtgctaa 350  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||  ||||| |||||||| ||||  ||||| |||||| |||||||||| | |||||    
T  2158598 aaaataatgcaaactatattaaaaataagaaataacattgtttgatacaatac-attacaatgaaaatcgtctcctatccatttgttgaaaatgagctaa 2158696  T
Q  351 aataacaatattgctaatt 369  Q
    ||||| |  ||||||||||    
T  2158697 aataatatcattgctaatt 2158715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 207 - 342
Target Start/End: Original strand, 33517953 - 33518087
Alignment:
Q  207 cggatctagacattcggtatatgcgtaactaaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaat 306  Q
    |||||||||||||| |||||||||| |  |||||| | | ||||| |||||| |||||||||||||||||||||| ||| ||||||||||  ||||| ||    
T  33517953 cggatctagacattaggtatatgcggagttaaaattttaaagaaacaataatacaaattatattaaaaataagaaataatattgtttgatacaatac-at 33518051  T
Q  307 tacaataaaaactgtctcttatccaattgttgaaaa 342  Q
    |||||| ||||  ||||  |||||| |||| |||||    
T  33518052 tacaatgaaaatcgtcttatatccatttgtcgaaaa 33518087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 235 - 357
Target Start/End: Original strand, 2813941 - 2814062
Alignment:
Q  235 ctaaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaatt 334  Q
    ||||||| ||| ||||| ||||||||||| ||||||||||||| ||| ||| ||||||||||  ||||| |||||||| |||   ||||| |||||| ||    
T  2813941 ctaaaatttcaaagaaacaataatgcaaactatattaaaaatatgaaataaaattgtttgatacaatac-attacaatgaaagtcgtctcatatccattt 2814039  T
Q  335 gttgaaaacgtgctaaaataaca 357  Q
    |||||||| | ||||||||||||    
T  2814040 gttgaaaatgagctaaaataaca 2814062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 464 - 554
Target Start/End: Original strand, 4377464 - 4377560
Alignment:
Q  464 ctgaaaaaacatgtttaacacttgcaattgctactcacaagag-----tcaacttcaaaagattataaa-tcataacaaatgtgttgcacttatttg 554  Q
    ||||||||||| ||| ||||||||||||||||||   ||||||     ||||||||||||| ||||||| ||||| |||||||||||||||||||||    
T  4377464 ctgaaaaaacacgttcaacacttgcaattgctaccggcaagagcaaagtcaacttcaaaagtttataaaatcatagcaaatgtgttgcacttatttg 4377560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 247 - 342
Target Start/End: Original strand, 4377200 - 4377294
Alignment:
Q  247 agaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaattgttgaaaa 342  Q
    ||||| ||||||||||| ||||||||||||||||| ||| ||||||||||  ||||| |||||||| ||||  ||||  |||||| ||||||||||    
T  4377200 agaaacaataatgcaaactatattaaaaataagaaataatattgtttgatacaatac-attacaatgaaaatcgtcttatatccatttgttgaaaa 4377294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 247 - 353
Target Start/End: Original strand, 36247791 - 36247897
Alignment:
Q  247 agaaaaaataatgcaaattatatt-aaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaattgttgaaaacgt 345  Q
    ||||| ||||||||||| |||||| ||||||||||||| | ||||||||||  ||||| |||||||| ||||  ||||| |||||| |||||||||| |     
T  36247791 agaaacaataatgcaaactatattaaaaaataagaattcatattgtttgatacaatac-attacaatgaaaatcgtctcatatccatttgttgaaaatga 36247889  T
Q  346 gctaaaat 353  Q
    ||||||||    
T  36247890 gctaaaat 36247897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 464 - 554
Target Start/End: Original strand, 36248055 - 36248150
Alignment:
Q  464 ctgaaaaaacatgtttaacacttgcaattgctactcacaagagt-----caacttcaaaagattataaatcataacaaatgtgttgcacttatttg 554  Q
    ||||||||||| ||| |||||||||| |||||||   ||||||      |||||||||||| ||||||||||||||||| ||||||||||||||||    
T  36248055 ctgaaaaaacacgttcaacacttgcagttgctaccggcaagagcaaagccaacttcaaaagtttataaatcataacaaaagtgttgcacttatttg 36248150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 235 - 317
Target Start/End: Original strand, 35390429 - 35390511
Alignment:
Q  235 ctaaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaa 317  Q
    ||||||| ||| |||||  || ||| |||||||| ||||||||| || ||||||||||||||| |||| ||||||||||||||    
T  35390429 ctaaaatttcaaagaaattatgatgtaaattatactaaaaataataaataacattgtttgatgcaataaaattacaataaaaa 35390511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 256 - 317
Target Start/End: Complemental strand, 50723279 - 50723219
Alignment:
Q  256 aatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaa 317  Q
    |||||||| ||||||||||||||||| |||||||||||||| |||||| |||||||| ||||    
T  50723279 aatgcaaactatattaaaaataagaaataacattgtttgatataatac-attacaatgaaaa 50723219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 466 - 553
Target Start/End: Complemental strand, 25023153 - 25023062
Alignment:
Q  466 gaaaaaacatgtttaacacttgcaattgctactcacaagagt-----caacttcaaaagattataaatcataacaaatgtgttgcacttattt 553  Q
    ||||||||||||| |||||||| | ||| || |||||||||      |||||||||||| |||||||| ||||||||||| ||||||||||||    
T  25023153 gaaaaaacatgttcaacacttgtagttgttattcacaagagcaaaaccaacttcaaaagtttataaat-ataacaaatgtattgcacttattt 25023062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 261 - 317
Target Start/End: Original strand, 30804379 - 30804435
Alignment:
Q  261 aaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaa 317  Q
    |||||||| ||||||||| || ||||||||||||||  |||||| ||||||||||||    
T  30804379 aaattatactaaaaataataaataacattgtttgattcaatacatttacaataaaaa 30804435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 508 - 554
Target Start/End: Original strand, 2158862 - 2158908
Alignment:
Q  508 caacttcaaaagattataaatcataacaaatgtgttgcacttatttg 554  Q
    |||||||||||| ||| ||| |||| |||||||||||||||||||||    
T  2158862 caacttcaaaagcttacaaaccatagcaaatgtgttgcacttatttg 2158908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 508 - 554
Target Start/End: Original strand, 2815805 - 2815851
Alignment:
Q  508 caacttcaaaagattataaatcataacaaatgtgttgcacttatttg 554  Q
    |||||| ||||| ||||||| |||| |||||||||||||||||||||    
T  2815805 caacttgaaaagtttataaaccatagcaaatgtgttgcacttatttg 2815851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 261 - 323
Target Start/End: Original strand, 46671916 - 46671978
Alignment:
Q  261 aaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtct 323  Q
    |||||||||||||||||| || ||| ||||||||||  |||||| ||| |||||||| |||||    
T  46671916 aaattatattaaaaataataaataatattgtttgattcaatacatttaaaataaaaattgtct 46671978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 223 - 295
Target Start/End: Original strand, 17938868 - 17938940
Alignment:
Q  223 gtatatgcgtaactaaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttga 295  Q
    ||||||| || |||||||| | | | ||||||| | |||||||| |||||||||||||| ||| |||||||||    
T  17938868 gtatatgtgtgactaaaatttaaaaaaaaaaatgaagcaaattacattaaaaataagaaataatattgtttga 17938940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 208 - 329
Target Start/End: Original strand, 23347781 - 23347902
Alignment:
Q  208 ggatctagacattcggtatatgcgtaactaaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaatt 307  Q
    |||||||| ||||||||||||| ||  ||||||| ||| | ||| ||||||||||| ||||||||| ||||||| ||||||||||||||| |||||  ||    
T  23347781 ggatctaggcattcggtatatgtgtggctaaaatttcaaataaacaataatgcaaactatattaaatataagaaataacattgtttgatgcaatacgctt 23347880  T
Q  308 acaataaaaactgtctcttatc 329  Q
    ||||| |||| ||||| |||||    
T  23347881 acaatgaaaattgtcttttatc 23347902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 461 - 554
Target Start/End: Original strand, 9477805 - 9477903
Alignment:
Q  461 tagctgaaaaaacatgtttaacacttgcaattgctac-----tcacaagagtcaacttcaaaagattataaatcataacaaatgtgttgcacttatttg 554  Q
    |||||||||||||| ||||||||||||||||||||||     | | || || |||||||||||  ||||||| |||| |||||||||||||||||||||    
T  9477805 tagctgaaaaaacacgtttaacacttgcaattgctactagcatgagaaaagccaacttcaaaactttataaaccatagcaaatgtgttgcacttatttg 9477903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 254 - 355
Target Start/End: Complemental strand, 9539748 - 9539648
Alignment:
Q  254 ataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaattgttgaaaacgtgctaaaat 353  Q
    |||||||||| ||||||||||||| ||| |||||| |||||||  ||||| |||||||| ||||   ||||||||||| |||||||||| | ||||||||    
T  9539748 ataatgcaaactatattaaaaatatgaaataacatcgtttgatacaatac-attacaatgaaaatcatctcttatccatttgttgaaaatgagctaaaat 9539650  T
Q  354 aa 355  Q
    ||    
T  9539649 aa 9539648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 249 - 353
Target Start/End: Complemental strand, 10781357 - 10781254
Alignment:
Q  249 aaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaattgttgaaaacgtgct 348  Q
    |||||| |||||||| ||||||||||||||||| ||| ||||||||||  ||||| |||||||| ||||  ||||  |||| | |||||||||| |||||    
T  10781357 aaaaaaaaatgcaaactatattaaaaataagaaataatattgtttgatacaatac-attacaatgaaaatcgtcttatatctatttgttgaaaatgtgct 10781259  T
Q  349 aaaat 353  Q
    |||||    
T  10781258 aaaat 10781254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 461 - 554
Target Start/End: Complemental strand, 9539539 - 9539441
Alignment:
Q  461 tagctgaaaaaacatgtttaacacttgcaattgctactcacaagagt-----caacttcaaaagattataaatcataacaaatgtgttgcacttatttg 554  Q
    |||||||||||||| |||||||||||||| ||||||    ||||||      |||||||||||| ||||||| || |||||||||||||||||||||||    
T  9539539 tagctgaaaaaacacgtttaacacttgcagttgctatcggcaagagcaaaaccaacttcaaaagtttataaaccaaaacaaatgtgttgcacttatttg 9539441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 508 - 554
Target Start/End: Complemental strand, 27464132 - 27464086
Alignment:
Q  508 caacttcaaaagattataaatcataacaaatgtgttgcacttatttg 554  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||    
T  27464132 caacttcaaaagcttataaatcataacaaatgtattgcacttatttg 27464086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 505 - 554
Target Start/End: Original strand, 6226911 - 6226960
Alignment:
Q  505 agtcaacttcaaaagattataaatcataacaaatgtgttgcacttatttg 554  Q
    ||||||||||||||| ||||||| |||| |||||||||||||||||||||    
T  6226911 agtcaacttcaaaagtttataaaccatagcaaatgtgttgcacttatttg 6226960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 461 - 553
Target Start/End: Original strand, 8065160 - 8065257
Alignment:
Q  461 tagctgaaaaaacatgtttaacacttgcaattgctactcacaagagt-----caacttcaaaagattataaatcataacaaatgtgttgcacttattt 553  Q
    |||||||||||||| |||||||| ||||| |||||||   ||||||      |||||||||||| ||||||| |||||||||||||||||| ||||||    
T  8065160 tagctgaaaaaacacgtttaacaattgcagttgctaccagcaagagcaaagccaacttcaaaagtttataaaccataacaaatgtgttgcatttattt 8065257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 505 - 554
Target Start/End: Original strand, 25031174 - 25031223
Alignment:
Q  505 agtcaacttcaaaagattataaatcataacaaatgtgttgcacttatttg 554  Q
    ||||||||||||||| ||||||| |||| ||||||||||||| |||||||    
T  25031174 agtcaacttcaaaagtttataaaccatagcaaatgtgttgcatttatttg 25031223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 505 - 554
Target Start/End: Original strand, 31738116 - 31738165
Alignment:
Q  505 agtcaacttcaaaagattataaatcataacaaatgtgttgcacttatttg 554  Q
    ||||||||| ||||  |||||||||||||||||||||||||| |||||||    
T  31738116 agtcaactttaaaaacttataaatcataacaaatgtgttgcatttatttg 31738165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 253 - 369
Target Start/End: Original strand, 8064950 - 8065065
Alignment:
Q  253 aataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaattgttgaaaacgtgctaaaa 352  Q
    |||||| |||| ||||||||||||||||| | ||||||||||||  ||||| |||||||| ||||  ||||| |||||| | ||||| || | || ||||    
T  8064950 aataatacaaactatattaaaaataagaaattacattgtttgatacaatac-attacaatgaaaatcgtctcctatccattggttgagaatgagcgaaaa 8065048  T
Q  353 taacaatattgctaatt 369  Q
    | |||  ||||||||||    
T  8065049 tgacatcattgctaatt 8065065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 247 - 281
Target Start/End: Complemental strand, 281178 - 281144
Alignment:
Q  247 agaaaaaataatgcaaattatattaaaaataagaa 281  Q
    ||||| |||||||||||||||||||||||||||||    
T  281178 agaaacaataatgcaaattatattaaaaataagaa 281144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 247 - 281
Target Start/End: Complemental strand, 9516797 - 9516763
Alignment:
Q  247 agaaaaaataatgcaaattatattaaaaataagaa 281  Q
    ||||| |||||||||||||||||||||||||||||    
T  9516797 agaaacaataatgcaaattatattaaaaataagaa 9516763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 208 - 342
Target Start/End: Complemental strand, 27464439 - 27464306
Alignment:
Q  208 ggatctagacattcggtatatgcgtaactaaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaatt 307  Q
    ||||||||||||| |||| ||| |   ||||||| ||| | ||| || ||| |||| |||||| |||||||||| |||| |||||||||  ||||| ||     
T  27464439 ggatctagacatttggtacatgtgaggctaaaatttcaaataaacaacaatacaaactatatttaaaataagaaataacgttgtttgatacaatac-atc 27464341  T
Q  308 acaataaaaactgtctcttatccaattgttgaaaa 342  Q
    ||||| ||||| |||| ||||| | ||||||||||    
T  27464340 acaattaaaaccgtctattatctatttgttgaaaa 27464306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 247 - 281
Target Start/End: Complemental strand, 43909407 - 43909373
Alignment:
Q  247 agaaaaaataatgcaaattatattaaaaataagaa 281  Q
    ||||| |||||||||||||||||||||||||||||    
T  43909407 agaaacaataatgcaaattatattaaaaataagaa 43909373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 280
Target Start/End: Complemental strand, 35438931 - 35438898
Alignment:
Q  247 agaaaaaataatgcaaattatattaaaaataaga 280  Q
    ||||| ||||||||||||||||||||||||||||    
T  35438931 agaaacaataatgcaaattatattaaaaataaga 35438898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 295
Target Start/End: Original strand, 1405901 - 1405961
Alignment:
Q  235 ctaaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttga 295  Q
    ||||||||||| ||||||||||||| ||| |||  ||||||||| || ||||||| |||||    
T  1405901 ctaaaatatcaaagaaaaaataatgtaaactatggtaaaaataaaaaataacattatttga 1405961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 261 - 317
Target Start/End: Complemental strand, 29703120 - 29703064
Alignment:
Q  261 aaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaa 317  Q
    |||||||| ||||||||| || ||||||||||||||  |||||| ||| ||||||||    
T  29703120 aaattatactaaaaataataaataacattgtttgattcaatacatttaaaataaaaa 29703064  T

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Target: scaffold0002 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 247 - 369
Target Start/End: Complemental strand, 461469 - 461348
Alignment:
Q  247 agaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaattgttgaaaacgtg 346  Q
    ||||| ||||||||||| ||||||||||||||||| |||||||||||| |  ||||| |||||||| ||||  ||||| |||| | |||||||||| | |    
T  461469 agaaataataatgcaaactatattaaaaataagaagtaacattgtttggtacaatac-attacaatgaaaatcgtctcctatctatttgttgaaaatgag 461371  T
Q  347 ctaaaataacaatattgctaatt 369  Q
    ||||||| |||  ||||||||||    
T  461370 ctaaaatgacatcattgctaatt 461348  T

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Target: scaffold0535 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0535
Description:

Target: scaffold0535; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 236 - 323
Target Start/End: Original strand, 9625 - 9712
Alignment:
Q  236 taaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtct 323  Q
    |||||| ||| |||||||||||||||||  ||||||||||||  || ||||| ||||||||| | | ||||||||||||||| |||||    
T  9625 taaaatttcaaagaaaaaataatgcaaacaatattaaaaatataaaataacaatgtttgatgcagtgcaattacaataaaaattgtct 9712  T

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Target: scaffold0535; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 505 - 554
Target Start/End: Original strand, 9903 - 9952
Alignment:
Q  505 agtcaacttcaaaagattataaatcataacaaatgtgttgcacttatttg 554  Q
    ||||||||||||||  |||||||  |||||||||||||||||||||||||    
T  9903 agtcaacttcaaaatcttataaaatataacaaatgtgttgcacttatttg 9952  T

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