View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17585_low_10 (Length: 240)
Name: NF17585_low_10
Description: NF17585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17585_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 10935280 - 10935499
Alignment:
| Q |
1 |
tttctctctaatgata-ttgttcgtaatactgcattgttgggactataatagattcgtgggttgagctgatcaatgtattattattgtctataatatctt |
99 |
Q |
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| T |
10935280 |
tttctctttaatgataattgttcgtagtactgcattgttgggactataatagattcgttggttgagctgatcaatgtattattattgtctataatatctt |
10935379 |
T |
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| Q |
100 |
tgtcaaccactaaattatctccttttgcagaaacaattggacaaggcattggctacacctgtgcagtccctctttgaaaaaggaggaaattaaatgacac |
199 |
Q |
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| T |
10935380 |
tgtcaaccactaaattatctccttttgcagaaacaattggccaaggcattggctacacctgtgcagtccctctttgaaaaaggagg-----aaatgacac |
10935474 |
T |
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| Q |
200 |
ctggctttcaataagaaatcttctt |
224 |
Q |
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||||||||||||||||||||||||| |
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| T |
10935475 |
ctggctttcaataagaaatcttctt |
10935499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 10959821 - 10960035
Alignment:
| Q |
4 |
ctctctaatgatattgttcgtaatactgcattgttgggactataatagattcgtgggttgagctgatcaatgtattattattgtctataatatctttgtc |
103 |
Q |
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|||||||||||||||||| |||||||||||| |||| ||||| |||||| |||||||||| || ||||||||||||| |||| |||||||| ||| |
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| T |
10959821 |
ctctctaatgatattgtttctaatactgcattattggcactatgttagattaatgggttgagcagagcaatgtattattagtgtcagcaatatcttcgtc |
10959920 |
T |
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| Q |
104 |
aaccactaaattatctccttttgcagaaacaattggacaaggcattggctacacctgtgcagtccctctttgaaaaaggaggaaattaaatgacacctgg |
203 |
Q |
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| T |
10959921 |
acccactaaattattcccttttgcagaaacaactggccaaggcattggttgcacctgtggagtccctctttgaagaaggaggaaag-----gacacctgg |
10960015 |
T |
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| Q |
204 |
ctttcaataagaaatcttct |
223 |
Q |
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|||||||||||||| ||||| |
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| T |
10960016 |
ctttcaataagaaaacttct |
10960035 |
T |
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