View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17585_low_2 (Length: 399)
Name: NF17585_low_2
Description: NF17585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17585_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 9 - 380
Target Start/End: Original strand, 45641185 - 45641556
Alignment:
| Q |
9 |
gagtagcataggtaaggtggtgattattcaaggtgagggtcataatagtactactactcgaaatggatttggttgcaagttttgtttttcgcgtccaaat |
108 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45641185 |
gagtagcagaggtaaggtggtgattattcaaggtgagggtcataatagtactactactcgaaatggatttggttgcaagttttgtttttcgcgtccaaat |
45641284 |
T |
|
| Q |
109 |
gtattggaaaaccctaatgggtcaactggtagtgaccctaatgatcctaaatttactcattctatgttgaagagtttattagagaagaatgatttttgtt |
208 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45641285 |
gtattggaaaaccctaatgggtcaactagtagtgaccctaatgatcctaaatttactcattctatgttgaagagtttattagagaagaatgatttttgtt |
45641384 |
T |
|
| Q |
209 |
ccaaagaatgcaatccacatattgaatcattgattgaatgattgattagtaatgtttggatatccattattgattttattttgttgtgttcagatggaat |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45641385 |
ccaaagaatgcaatccacatattgaatcattgattgaatgattgattagtaatgtttggatatccattattgattttattttgttgtgttcagatggaat |
45641484 |
T |
|
| Q |
309 |
ttgtctgtattgtggggtgtttcttctgtcctgtctcattttgaaattcagtggcattatgtctgagaagag |
380 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45641485 |
ttgtctgtattgttgggtgtttgttctgtcctgtctcattttgaaattcagtggcattatgtctgagaagag |
45641556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University