View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17585_low_4 (Length: 317)
Name: NF17585_low_4
Description: NF17585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17585_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 12 - 276
Target Start/End: Original strand, 40785848 - 40786112
Alignment:
| Q |
12 |
gaagaatattgtgtatgttgatgttggtgttagtaaagtggataaggtgaaaaaatgtccttcaatgccaagtannnnnnncatagaagatggagaagat |
111 |
Q |
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| T |
40785848 |
gaagaagattgtgtatgttgatgttggtgttagtaaagtggataaggtgaaaaaatgtccttcaatgccaagtatttttttcatagaagatggagaagat |
40785947 |
T |
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| Q |
112 |
gatctagaagtgaaggatgaggaggttgaagtagaagatgagatttgtggtgttaatggtcaagaactttttgcaaaagctgaagctttcattggaaatt |
211 |
Q |
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| T |
40785948 |
gatctagaagtgaaggatgaggaggttgaagtagaagatgagatttgtggtgttaatggtcaagaactttttgcaaaagctgaagctttcattggaaatt |
40786047 |
T |
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| Q |
212 |
tctacaagcagttgaagatgcagagagaggagtgctgggattcttagtaaacctatttaggactt |
276 |
Q |
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| T |
40786048 |
tctacaagcagttgaagatgcagagagaggaatgctgggattcttagtaaacctatttaggactt |
40786112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 33 - 239
Target Start/End: Original strand, 40793621 - 40793827
Alignment:
| Q |
33 |
tgttggtgttagtaaagtggataaggtgaaaaaatgtccttcaatgccaagtannnnnnncatagaagatggagaagatgatctagaagtgaaggatgag |
132 |
Q |
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| T |
40793621 |
tgttggtgttacaaaagttgaaaagatgaaaaagtgtccttcaatggcaagtatcttttttatagaagatggagaagatgatttagaagtgaagaatgaa |
40793720 |
T |
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| Q |
133 |
gaggttgaagtagaagatgagatttgtggtgttaatggtcaagaactttttgcaaaagctgaagctttcattggaaatttctacaagcagttgaagatgc |
232 |
Q |
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| T |
40793721 |
gaggttgaagttgaagatgagatttatggtgttaatggacaagaactttttgcaaaagctgaggctttcataggtaacttctacaagcaattgaagatgc |
40793820 |
T |
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| Q |
233 |
agagaga |
239 |
Q |
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| T |
40793821 |
aaagaga |
40793827 |
T |
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