View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17585_low_6 (Length: 315)
Name: NF17585_low_6
Description: NF17585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17585_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 20 - 303
Target Start/End: Original strand, 38183506 - 38183789
Alignment:
| Q |
20 |
cattctttgcgtacatataaaccaatggcgtcgcaagaaccacacccacttcaacctctttcactcataaactcatgaaccatttccccaagctcaagac |
119 |
Q |
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| T |
38183506 |
cattctttgcgtacatataaaccaatggcgtcacaagaaccacacccacttcaacctctttcactcataaactcatgaaccatttccccaagctcaagac |
38183605 |
T |
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| Q |
120 |
aacccggccggacacaagccgacaacaccgaaaccaaggtagcaccagtaggcttaaaccctacaacaaccatatccccttaaaaagttctgagcatata |
219 |
Q |
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|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
38183606 |
aacccgaccgggcacaagccgacaacaccgaaaccaaggtagcaccagtaggcttaaaccctacaacaaccatatccccttaaaaagttatgagcatata |
38183705 |
T |
|
| Q |
220 |
cctacaaatcttgtagttcaaagactcaaacttttcagcagaatttcatcaaacatgtaacgggcatcaaccacatcaccagaa |
303 |
Q |
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| T |
38183706 |
cctacaaatcttgtagttcaaagactcaaacttttcagcagaatttcatcaaacatgtaacgggcatcaaccaaatcaccagaa |
38183789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 12011484 - 12011658
Alignment:
| Q |
20 |
cattctttgcgtacatataaaccaatggcgtcgcaagaaccacacccacttcaacctctttcactc--ataaactcatgaaccatttccccaagctcaag |
117 |
Q |
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||||||| || |||||||||||||| | ||| |||||| || |||||||||||| ||||||||| ||||||||||||| | |||||||||||||||| |
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| T |
12011484 |
cattcttcgcatacatataaaccaacgcggtcccaagaataactcccacttcaacccctttcactctcataaactcatgaatcctttccccaagctcaag |
12011583 |
T |
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| Q |
118 |
acaacccggccggacacaagccgacaacaccgaaaccaaggtagcaccagtaggcttaaaccctacaacaaccat |
192 |
Q |
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| T |
12011584 |
acaacccgaccgagcacaaaccgacaacaccgaagccaaagtagcaccattaggctcaaacccaacaacaaccat |
12011658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 174
Target Start/End: Original strand, 38189488 - 38189644
Alignment:
| Q |
20 |
cattctttgcgtacatataaaccaatggcgtcgcaagaaccacacccacttcaacctctttcactc--ataaactcatgaaccatttccccaagctcaag |
117 |
Q |
| |
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||||||| ||||||||||| |||||| |||||||||| ||| |||||||||||| ||||| ||| ||||||||||||| |||||||||||||| || |
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| T |
38189488 |
cattcttcacgtacatataagccaatgccgtcgcaagactcactcccacttcaacccctttcgctcttataaactcatgaatcatttccccaagcttcag |
38189587 |
T |
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| Q |
118 |
acaacccggccggacacaagccgacaacaccgaaaccaaggtagcaccagtaggctt |
174 |
Q |
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| T |
38189588 |
acaatctgactgggcacaagccaacaacaccaaaaccaagatagcacccttaggctt |
38189644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 238 - 303
Target Start/End: Original strand, 12011726 - 12011791
Alignment:
| Q |
238 |
caaagactcaaacttttcagcagaatttcatcaaacatgtaacgggcatcaaccacatcaccagaa |
303 |
Q |
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|||||||||||| |||||| | ||||||||||||||| |||||| |||||||||| |||||||||| |
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| T |
12011726 |
caaagactcaaatttttcatcggaatttcatcaaacacgtaacgtgcatcaaccaaatcaccagaa |
12011791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 201 - 277
Target Start/End: Original strand, 38190069 - 38190146
Alignment:
| Q |
201 |
aaaaagttctgagcatatacctacaaatc-ttgtagttcaaagactcaaacttttcagcagaatttcatcaaacatgt |
277 |
Q |
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||||||| |||||||| ||| ||||||| ||||||| | |||||||||||||||||||| ||||||||||||||||| |
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| T |
38190069 |
aaaaagtcatgagcatacacccacaaatcattgtagtccgaagactcaaacttttcagcaaaatttcatcaaacatgt |
38190146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 300
Target Start/End: Complemental strand, 7857044 - 7856986
Alignment:
| Q |
242 |
gactcaaacttttcagcagaatttcatcaaacatgtaacgggcatcaaccacatcacca |
300 |
Q |
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|||||||||||||| |||||| |||||||||||||||||||||||| | ||||||| |
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| T |
7857044 |
gactcaaacttttctcgggaattttatcaaacatgtaacgggcatcaacaaaatcacca |
7856986 |
T |
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