View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17585_low_7 (Length: 284)
Name: NF17585_low_7
Description: NF17585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17585_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 10 - 142
Target Start/End: Complemental strand, 8362647 - 8362515
Alignment:
| Q |
10 |
aatgaatatcttgtgtctttatttttgtaatttctttgtagctcttttgtcgtactttgcacaaataccctgatcaacaaattatatatctaataagcaa |
109 |
Q |
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| T |
8362647 |
aatgaatatcttgtgtctttatttttgtaatttctttatagctcttttgtcgtactttgcacaaataccctgatcaacaaattatatatctagtaagcaa |
8362548 |
T |
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| Q |
110 |
caatgttctacattcatttcttaacacatgttt |
142 |
Q |
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| T |
8362547 |
caatgttctacattcatttcttaacacatgttt |
8362515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 135
Target Start/End: Complemental strand, 8370512 - 8370400
Alignment:
| Q |
23 |
tgtctttatttttgtaatttctttgtagctcttttgtcgtactttgcacaaataccctgatcaacaaattatatatctaataagcaacaatgttctacat |
122 |
Q |
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| T |
8370512 |
tgtctttatttttgtaatttctttgtagatcttttgttgtactttgcacaactattatgatcaacaaattatatatccagtaagcaacaatgttctttat |
8370413 |
T |
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| Q |
123 |
tcatttcttaaca |
135 |
Q |
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| T |
8370412 |
tcatttcttaaca |
8370400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 137
Target Start/End: Complemental strand, 8371921 - 8371798
Alignment:
| Q |
14 |
aatatcttgtgtctttatttttgtaatttctttgtagctcttttgtcgtactttgcacaaataccctgatcaacaaattatatatctaataagcaacaat |
113 |
Q |
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| T |
8371921 |
aatatcttgtgtctttctttttgtaatttctatgtagatcttttgttgtactttgcacgactattctgatcaacagattatatatccagtaagcaacaat |
8371822 |
T |
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| Q |
114 |
gttctacattcatttcttaacaca |
137 |
Q |
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| T |
8371821 |
gttctttatttatttcttaacaca |
8371798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 209
Target Start/End: Complemental strand, 8362493 - 8362460
Alignment:
| Q |
176 |
ggtttacttttgagaaagtaaagcaaccaatttg |
209 |
Q |
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| T |
8362493 |
ggtttacttttgagaaagtaaagcaaccaatttg |
8362460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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