View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17585_low_8 (Length: 271)
Name: NF17585_low_8
Description: NF17585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17585_low_8 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 271
Target Start/End: Complemental strand, 1446845 - 1446585
Alignment:
| Q |
11 |
gaagaaaaccgcactgccgtaacaaaatgtcgaagccgccagaaacttcaacggaagaagtagatagaataagcagtttaccagatgatatcctaattca |
110 |
Q |
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|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
1446845 |
gaagaacaccgcactgccgtaacaaaatgtctaagccgccagaaacttcaacggaagaagtagataggataagcagtttaccagacgatatcctaattca |
1446746 |
T |
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| Q |
111 |
aattctctcttctcttcccaccaaacaagcctttctcacttccattctttcaaagagatggaagcatctacggttttgtgttccagatattaactttacc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||| |||||||| |
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| T |
1446745 |
aattctctcttctcttcccaccaaacaagcctttctcacttccattctttcaaagagatggaagcatctatggttttttgttccagttattgactttacc |
1446646 |
T |
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| Q |
211 |
gaaaccaaacactccgattcacgtttattcgacaaattcgttgactccatcttgagcttgc |
271 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
1446645 |
aaaaccaaacactccgattcacgcttattcgacaaattcgttgactccatcttgtgcttgc |
1446585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 70 - 198
Target Start/End: Original strand, 12094080 - 12094208
Alignment:
| Q |
70 |
gtagatagaataagcagtttaccagatgatatcctaattcaaattctctcttctcttcccaccaaacaagcctttctcacttccattctttcaaagagat |
169 |
Q |
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|||||||| || |||| ||||||||| |||||||| ||||| ||||| |||||| |||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
12094080 |
gtagataggatcagcaatttaccagacgatatcctgattcacattctgtcttcttttcccaccaaacaagcctttgtcacttcaattctttcaaagagat |
12094179 |
T |
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| Q |
170 |
ggaagcatctacggttttgtgttccagat |
198 |
Q |
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| T |
12094180 |
ggaagcatctatggtgttacgttccagat |
12094208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 70 - 180
Target Start/End: Complemental strand, 1460135 - 1460025
Alignment:
| Q |
70 |
gtagatagaataagcagtttaccagatgatatcctaattcaaattctctcttctcttcccaccaaacaagcctttctcacttccattctttcaaagagat |
169 |
Q |
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|||||||| || |||| ||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||| | |||||| ||||||||||||||| |
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| T |
1460135 |
gtagataggatcagcattttaccagatgatatcctagttcacattctctctcctcttcccaccaaacaagcctttgtgacttccgttctttcaaagagat |
1460036 |
T |
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| Q |
170 |
ggaagcatcta |
180 |
Q |
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||||| ||||| |
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| T |
1460035 |
ggaagaatcta |
1460025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 82 - 180
Target Start/End: Original strand, 12104432 - 12104530
Alignment:
| Q |
82 |
agcagtttaccagatgatatcctaattcaaattctctcttctcttcccaccaaacaagcctttctcacttccattctttcaaagagatggaagcatcta |
180 |
Q |
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|||| |||| |||| |||||||| ||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
12104432 |
agcaatttatcagacgatatcctgattcacattctctcttttcttcccaccaaacaagcctttctcacttcaattctttcaaagagatggaagcatcta |
12104530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 70 - 172
Target Start/End: Original strand, 820413 - 820515
Alignment:
| Q |
70 |
gtagatagaataagcagtttaccagatgatatcctaattcaaattctctcttctcttcccaccaaacaagcctttctcacttccattctttcaaagagat |
169 |
Q |
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|||||||| || | |||||||| ||||||||||| ||||| |||||||||||| |||| ||||||||||||||| |||||||||||||||||||| ||| |
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| T |
820413 |
gtagataggatcaacagtttactggatgatatcctgattcatattctctcttctgttcctaccaaacaagcctttgtcacttccattctttcaaagcgat |
820512 |
T |
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| Q |
170 |
gga |
172 |
Q |
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||| |
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| T |
820513 |
gga |
820515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 85 - 194
Target Start/End: Original strand, 409133 - 409242
Alignment:
| Q |
85 |
agtttaccagatgatatcctaattcaaattctctcttctcttcccaccaaacaagcctttctcacttccattctttcaaagagatggaagcatctacggt |
184 |
Q |
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||||||||||| || || || ||||| |||||||||| | |||||||||||||||||||| |||| |||||||||||||||||||||| |||||| ||| |
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| T |
409133 |
agtttaccagacgagattctgattcacattctctcttttgttcccaccaaacaagcctttgtcacatccattctttcaaagagatggactcatctatggt |
409232 |
T |
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| Q |
185 |
tttgtgttcc |
194 |
Q |
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|| |||||| |
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| T |
409233 |
gttttgttcc |
409242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 71 - 219
Target Start/End: Complemental strand, 975723 - 975575
Alignment:
| Q |
71 |
tagatagaataagcagtttaccagatgatatcctaattcaaattctctcttctcttcccaccaaacaagcctttctcacttccattctttcaaagagatg |
170 |
Q |
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||||||| || |||||||| || || || ||||| |||| ||||||||||||||||||| ||||||||| | |||||||||||||||||||| |||| |
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| T |
975723 |
tagataggattagcagttttcccgacgacatcctgattcgcattctctcttctcttcccattgaacaagcctgtgtcacttccattctttcaaagcgatg |
975624 |
T |
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| Q |
171 |
gaagcatctacggttttgtgttccagatattaactttaccgaaaccaaa |
219 |
Q |
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|| ||||| ||| || |||||| ||| || |||| ||| |||||||| |
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| T |
975623 |
gactcatctttggtgttttgttcccgatcttgacttcaccaaaaccaaa |
975575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 172
Target Start/End: Complemental strand, 997558 - 997471
Alignment:
| Q |
85 |
agtttaccagatgatatcctaattcaaattctctcttctcttcccaccaaacaagcctttctcacttccattctttcaaagagatgga |
172 |
Q |
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|||||||| || || |||||||| || |||||||||| | ||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
997558 |
agtttaccggacgagatcctaatccacattctctcttttgttcccaccaaacaagccttcgcaacttccattctttcaaagcgatgga |
997471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 165
Target Start/End: Original strand, 1398661 - 1398741
Alignment:
| Q |
85 |
agtttaccagatgatatcctaattcaaattctctcttctcttcccaccaaacaagcctttctcacttccattctttcaaag |
165 |
Q |
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||||||||||| ||||| || | || || ||||||||| ||||||||||||||||| | ||| ||||||||||||||| |
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| T |
1398661 |
agtttaccagacgatattctgactcgcatactctcttctgttcccaccaaacaagccgtagccacatccattctttcaaag |
1398741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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