View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17586_low_2 (Length: 331)
Name: NF17586_low_2
Description: NF17586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17586_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 11 - 316
Target Start/End: Original strand, 35353265 - 35353568
Alignment:
| Q |
11 |
tggctgtaaagttcacaacccgccactatataaagggtcatgtgaagtgtgaaataatctaaattctagagaaatgagcatgtgtgagtggtcatgtatt |
110 |
Q |
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| T |
35353265 |
tggctgtaaagttcacaacccgccactatataaagggtcatgtgaagtgtgaaataatctaaattctagagaaatgagcatgtgtgagtggtcatgtatt |
35353364 |
T |
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| Q |
111 |
aggagtgtctcttgttagtccgtgtttattattccttgtaattcttgagtagggtatacgaatttttggggtggtacacatagtggagagggtttcatat |
210 |
Q |
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| T |
35353365 |
aggagtgtctcttgttagtccgtgtttattattccttgtaattcttgagtagggtatacgaatttttggggtggtacacatagtggagagggtttcatat |
35353464 |
T |
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| Q |
211 |
tttctattgaacnnnnnnnnnnnnnnngaaggaattttctattgaacttgtaatcttatttgagatgacgaatatttggttggactgtttccatggacgt |
310 |
Q |
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| T |
35353465 |
tttctattgaac--tttttttttttttgaaggaattttctattgaacttgtaatcttatttgagatgacgaatatttggttggactgttgccatggacgt |
35353562 |
T |
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| Q |
311 |
gggtaa |
316 |
Q |
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|||||| |
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| T |
35353563 |
gggtaa |
35353568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 308
Target Start/End: Original strand, 35352293 - 35352355
Alignment:
| Q |
246 |
tttctattgaacttgtaatcttatttgagatgacgaatatttggttggactgtttccatggac |
308 |
Q |
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||||||| || |||||||||||||||||||| ||||| || |||||| ||||||||||||| |
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| T |
35352293 |
tttctatagagcttgtaatcttatttgagatattgaatagtttgttggagtgtttccatggac |
35352355 |
T |
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