View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17586_low_4 (Length: 241)

Name: NF17586_low_4
Description: NF17586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17586_low_4
NF17586_low_4
[»] chr1 (3 HSPs)
chr1 (78-137)||(7257902-7257961)
chr1 (10-72)||(7257800-7257862)
chr1 (187-241)||(7258005-7258059)


Alignment Details
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 7257902 - 7257961
Alignment:
Q  78 tcacagttataatagaatttcaatcttagtacaacatgaaccacaattaatagatgacag 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7257902 tcacagttataatagaatttcaatcttagtacaacatgaaccacaattaatagatgacag 7257961  T

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Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 7257800 - 7257862
Alignment:
Q  10 catcatcataaacaggtgaatctcggaatgaattgaagggcctctcagaagagaaattattaa 72  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7257800 catcatcataaacaggtgaatctcggaatgaactgaagggcctctcagaagagaaattattaa 7257862  T

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Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 187 - 241
Target Start/End: Original strand, 7258005 - 7258059
Alignment:
Q  187 aatgaaatcaacttactactccaagttgttctgatgctttggccttccaaagtct 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7258005 aatgaaatcaacttactactccaagttgttctgatgctttggccttccaaagtct 7258059  T

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