View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17587_low_1 (Length: 460)
Name: NF17587_low_1
Description: NF17587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17587_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 16 - 451
Target Start/End: Original strand, 13650124 - 13650562
Alignment:
| Q |
16 |
gttttctcctatatttggattcattatgtcgtgttaataagataaatgctacctcaaatagataaatattgtttacaaaccaaaaatatggtaacaattt |
115 |
Q |
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| T |
13650124 |
gttttctcctatatttggattcattatgtcatgttaataagataaatgctacctcaaatagataaatattgtttacaaaccaaaaatatggttacaattt |
13650223 |
T |
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| Q |
116 |
gttttctcctatatttagattctttctgtcatcatacatacaaacatatacaaaagcaaataatctagggtttaagctcattcaccttcttc---ttgtt |
212 |
Q |
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| T |
13650224 |
gttttctcctgtatttagattctttctgtcatcatacatacaaacatatacaaaagcaaataatctagggtttaagctcatttatcttcttcttgttgtt |
13650323 |
T |
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| Q |
213 |
aataacgaatgaaaaagtgtcaatagnnnnnnnnttgatttttctatattacaagaaggaaaaaataaccatgagtgacaagaacgcacctatatgttat |
312 |
Q |
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| T |
13650324 |
aataacgaatgaaaaagtgtcaatacaaaaaaaattgatttttctatattacaagaaggaaaaaataaccatgagtggcaagaatgcacctatatgctat |
13650423 |
T |
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| Q |
313 |
gatgtaaatgtgtttgatcccagtcatctatggcaaactcgaaatgtccttaaaagcgagttaccggaaattgcaacttcaattgcatttacggtattat |
412 |
Q |
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| T |
13650424 |
gatgtaaatgtgtttgatcccagtcatctatggcaaactcaaaatgtccttaaaagcgagttaccggaaattgcaacttcaattgcatttacggtattat |
13650523 |
T |
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| Q |
413 |
tgtcgcttctcatcttctccgtcctaaaacctcttcatc |
451 |
Q |
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| T |
13650524 |
tgtcgcttctcatcttctccgtcctaaaacctcttcatc |
13650562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 227
Target Start/End: Original strand, 13656079 - 13656298
Alignment:
| Q |
16 |
gttttctcctatatttggattcattatgtcgtgttaataagataaatgctacctcaaatagataaatattgttta------------caaaccaaaaata |
103 |
Q |
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| T |
13656079 |
gttttcttctatatttggactctttctttcatgataacaagataaatgctacctcaaatagataaatatagtttaaaccctttttttcaaactaaaaata |
13656178 |
T |
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| Q |
104 |
tggtaacaatttgttttctcctatatttagattctttctgtcatcatacatacaaacatatacaaaagcaaataatctagggtttaagctcattcacctt |
203 |
Q |
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| T |
13656179 |
tggttaaaatttgtgttttcctatatttggattctttctgtcatcatacat----acatatacaaatgcaaataatgcaaagtttaagctcgtttacctt |
13656274 |
T |
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| Q |
204 |
cttcttgttaataacgaatgaaaa |
227 |
Q |
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| T |
13656275 |
cttgttgttcataacgaatgaaaa |
13656298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 303 - 451
Target Start/End: Original strand, 13656388 - 13656536
Alignment:
| Q |
303 |
tatatgttatgatgtaaatgtgtttgatcccagtcatctatggcaaactcgaaatgtccttaaaagcgagttaccggaaattgcaacttcaattgcattt |
402 |
Q |
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| T |
13656388 |
tatatgctataaggtaaatgtttttgatcccaaacatttatggcaaactcgaaatgtccttaaaggcgagctacctgaaattgcgactgcaattgccttt |
13656487 |
T |
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| Q |
403 |
acggtattattgtcgcttctcatcttctccgtcctaaaacctcttcatc |
451 |
Q |
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| T |
13656488 |
atcgtattattgtctcgtatcgtcttcttcatctttaaacctcttcatc |
13656536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 84
Target Start/End: Original strand, 13650050 - 13650080
Alignment:
| Q |
54 |
aagataaatgctacctcaaatagataaatat |
84 |
Q |
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| T |
13650050 |
aagataaatgctacctcaaatagataaatat |
13650080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 147
Target Start/End: Original strand, 13656060 - 13656110
Alignment:
| Q |
97 |
aaaaatatggtaacaatttgttttctcctatatttagattctttctgtcat |
147 |
Q |
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| T |
13656060 |
aaaaatatggttacaatttgttttcttctatatttggactctttctttcat |
13656110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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