View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17588_high_13 (Length: 407)
Name: NF17588_high_13
Description: NF17588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17588_high_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 336119 - 336513
Alignment:
| Q |
1 |
tatccactattctttcaatttttaccaaaactaaactagatgagtgacacattgccacatacacttcttataataataaataataggatatggtcatgtg |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
336119 |
tatccactattctttcaatttt-accaaaactaaactagatgagtgacacattgccacatacacttcttataataataaataataggatatggtcatgtg |
336217 |
T |
|
| Q |
101 |
agagtttgatatacacaagttagttaatt-atatagttaactcttttttaccgtaactctttcatttcatcataaattggagagtcctatcccagttact |
199 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
336218 |
agagtttgatatacacaagttagttaatttatatagttaactcttttttaccgtaactctttcatttcatcataaattggagagtcctatcccagttact |
336317 |
T |
|
| Q |
200 |
ccaaaacaagatcatatggatacattagcttcagaatgcagcagtgggtgtgagtctggatggactctataccttgaccgttctctcaatacctcacaat |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
336318 |
ccaaaacaagatcatatggatacattagcttcagaatgcagcagtgggtgtgagtctggatggactctataccttgaccgttctctcaatacctcacaat |
336417 |
T |
|
| Q |
300 |
cacatacaccttcacttggttgttatgaagaaactaaacacaaaaaggctcaaaatattgaggactctgatgaagaggacttgtccatggtctctg |
395 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
336418 |
cacatacaccttcacttggttgttatgaagaaactaaacacaaaaaggctcaaaatattgaggactctgatgaagaggacttgtccatggtttctg |
336513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University