View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17588_high_19 (Length: 366)
Name: NF17588_high_19
Description: NF17588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17588_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 13 - 353
Target Start/End: Original strand, 34129142 - 34129482
Alignment:
| Q |
13 |
cagatatgagctgttgaaagaagaaacgagcctgcatcatgtcaatatattaccatgatgtatagcggacatattataagtataaattcacactctgaat |
112 |
Q |
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| T |
34129142 |
cagatatgagctgttgaaagaagaaacgagcctgcatcatgtcaatatattaccatgatgtatagcggacatattataagtacaaattcacactctgaat |
34129241 |
T |
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| Q |
113 |
aaacaggtgccgcaaaagtaagaaaattaaatgagaacctcgtcctcagaaaaatggccagcattactgattcgctcaaaaagttctcctccagatgcat |
212 |
Q |
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| T |
34129242 |
aaacaggtgccgcaaaagtatgaaaattaaatgagaacctcgtcctcagaaaaatggccagcattactgattcgctcaaaaagttctcctccagatgcat |
34129341 |
T |
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| Q |
213 |
actccattacaatagcaagatgagtaggtgttaaaatgacctgagtaaaattttacacagcattacacatacatgtgattacccttctacctatataaat |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
34129342 |
actccattacaatagcaagatgagtaggtgttaaaatgacctgagtaaaattttacacagcattacacatacatgtgattacccttctatctatataaat |
34129441 |
T |
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| Q |
313 |
ataaaaatgcatactaacctccttaaacctaacaatgttag |
353 |
Q |
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| T |
34129442 |
ataaaaatgcatactaacctccttaaacctaacaatgttag |
34129482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 240
Target Start/End: Original strand, 39882963 - 39883033
Alignment:
| Q |
170 |
ccagcattactgattcgctcaaaaagttctcctccagatgcatactccattacaatagcaagatgagtagg |
240 |
Q |
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| T |
39882963 |
ccagcattacagatcctctcaaagagttcccctccagctgcatactccattactattgctaaatgagtagg |
39883033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 179 - 265
Target Start/End: Complemental strand, 6709780 - 6709694
Alignment:
| Q |
179 |
ctgattcgctcaaaaagttctcctccagatgcatactccattacaatagcaagatgagtaggtgttaaaatgacctgagtaaaattt |
265 |
Q |
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||||||| ||||| | |||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||| ||| |||||| |
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| T |
6709780 |
ctgattctgtcaaacatttctcctccagatgcatattccattacaatggccagatgagtaggtgttaaaatgacctaagtgaaattt |
6709694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 48
Target Start/End: Complemental strand, 6709939 - 6709906
Alignment:
| Q |
15 |
gatatgagctgttgaaagaagaaacgagcctgca |
48 |
Q |
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| T |
6709939 |
gatatcagctgttgaaagaagaaacgagcctgca |
6709906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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