View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17588_high_22 (Length: 338)
Name: NF17588_high_22
Description: NF17588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17588_high_22 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 12 - 317
Target Start/End: Complemental strand, 44676882 - 44676577
Alignment:
| Q |
12 |
acagacaacgagattaaaaactactggaactcacacttgagtagaaaagtttacagcttccgaggaacatcaacaacaaattataataatatcaaagata |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
44676882 |
acagacaacgagattaaaaactactggaactcacacttgagtagaaaagtttacagcttccgaggaacatcaacaacaaattataataatatcaaagaga |
44676783 |
T |
|
| Q |
112 |
tagagattccatcagaagaaggaatcatagtggatacacctcccaaacgtaaaggtggtagaactagtcgatgggctatgaagaagaacatacgatatat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44676782 |
tagagattccatcagaagaaggaatcatagtggatacacctcccaaacgtaaaggtggtagaactagtcgatgggctatgaagaagaacatacgatatat |
44676683 |
T |
|
| Q |
212 |
atcccaaaatgttttccaaaaaagtgaacctgcttcaattgttacacttccacccacccctacactagagaccgagaaaatggttatgggctcagtaaat |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44676682 |
atcccaaaatgttttccaaaaaagtgaacctgcttcaattgttacacttccacccacccctacactagagaccgagaaaatggttatgggctcagtaaat |
44676583 |
T |
|
| Q |
312 |
gggcct |
317 |
Q |
| |
|
|||||| |
|
|
| T |
44676582 |
gggcct |
44676577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University