View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17588_high_24 (Length: 330)
Name: NF17588_high_24
Description: NF17588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17588_high_24 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 35353102 - 35352783
Alignment:
| Q |
1 |
tgaatagtcaaaataataaccccaaaagcatagcaatttattatgcattggaatcactcgcttgaatttatgttagaaatttcaaatcggttttcgtaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35353102 |
tgaatagtcaaaataataaccccaaaagcatagcaatttattatgcattggaatcactcgcttgaatttatgttagaaatttcaaatcggttttcgtaac |
35353003 |
T |
|
| Q |
101 |
aattccaccctcaattaaaatttccaatcttcctttcgtcagaaaagtttactatatat--tacaaaattgctattactgcattcccttaacaaagtttt |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
35353002 |
aattccaccctcaattaaaatttccaatcttcctttcgtcagaaaagtttactatatattatacaaaattgctattactgcattcccttaacaaagtttt |
35352903 |
T |
|
| Q |
199 |
cccttctaaatatttttcttctcgttttattcacttgtaggaccatgcacttccttatgtactatacaccttgcaaagcgactttggaccatcgaacttc |
298 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35352902 |
cccttctaaatatttttcttctcgttttattcacttgtaggaccatgcacttccttatgtactatacaccttgcaaagcgactttggaccatcgaacttc |
35352803 |
T |
|
| Q |
299 |
tactcaagtgatttcatctc |
318 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
35352802 |
tactcaagtgatttcatctc |
35352783 |
T |
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