View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17588_high_34 (Length: 278)
Name: NF17588_high_34
Description: NF17588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17588_high_34 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 32266617 - 32266359
Alignment:
| Q |
1 |
cgttttgtttctgaatcttctgataataacaatgagattgttttagagacgaaatcgaagattgttatcagaaatggtaacaaatttgtagctaataatg |
100 |
Q |
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| T |
32266617 |
cgttttgtttctgaatcttctgataataacaatgagattgttctagagacgaaatccaagattgttatcagaaatggtaacaaatttgtagctaatcatg |
32266518 |
T |
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| Q |
101 |
ctcgtgaatttgttgcggagaagaaaaagaagctgaaaatggttgggattggtggtgtttcgaataattcagattcgagggatttcagatatggttcaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32266517 |
ctcgtgaatttgttgcggagaagaaaaagaagctgaaaatggttgggatt---ggtgtttcgaataattcagatttgagggatttcagatatggttcaaa |
32266421 |
T |
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| Q |
201 |
gaaaatcaaatttgtagattcaagtgttccaaactatgaattcaagaggcctaaggtggaag |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32266420 |
gaaaatcaaatttgtagattcaagtgttccaaactatgaattcaagaggcctaaggtggaag |
32266359 |
T |
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