View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17588_high_37 (Length: 260)
Name: NF17588_high_37
Description: NF17588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17588_high_37 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 40 - 260
Target Start/End: Complemental strand, 2937759 - 2937539
Alignment:
| Q |
40 |
aatgggatcttaaatatattaagggnnnnnnnttgaaactttaaataacttacctcaatgcctttcaaaaaataaataacatacctcgtccaatgaaaca |
139 |
Q |
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| T |
2937759 |
aatgggatcttaaatatattaagggaaaaaaattgaaactttaaataacttacctcaatgcctttcaaaaaataaataacatacctcgtccaatgaaaca |
2937660 |
T |
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| Q |
140 |
caacattttaatcattatttcctttctttttaaaaatatattttccctttaatcttattagaatgagtcatgctaacaaacaataagtgtcaaaagaaca |
239 |
Q |
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| T |
2937659 |
caacattttaatcattatttcctttctttttaaaaatatattttccctttaatcttattagaatgagtcatgctaacaaacaataagtgtcaaaagaaca |
2937560 |
T |
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| Q |
240 |
ttgttcaagaaactttaaaaa |
260 |
Q |
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| T |
2937559 |
ttattcaagaaactttaaaaa |
2937539 |
T |
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