View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17588_high_4 (Length: 533)
Name: NF17588_high_4
Description: NF17588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17588_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 93 - 520
Target Start/End: Original strand, 18237770 - 18238194
Alignment:
| Q |
93 |
ctttcatcaaatcaaacatatgcatgtatgtccttaagtatgtccaaaatataatcaccttcgattctgaggagaaaggaaataaattccaatgctgaag |
192 |
Q |
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| T |
18237770 |
ctttcatcaaatcaaacatatgcatgtatatccttaagtatgtccaaaatataatcaccttggattatgaggagaaaggaaataaattccaatgctgaag |
18237869 |
T |
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| Q |
193 |
ttattcgtaccagaattcttgaaactttcaggccacacagttgatttttgatggaagtttgcagaaatcatattagggagatatctagcctcttcatgaa |
292 |
Q |
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| T |
18237870 |
ttattcgtaccagaattcttgaaactttcaggccacacggttgatttttgaaggaagtttgcagaaatcatattagggagatatctagcctcttcatgaa |
18237969 |
T |
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| Q |
293 |
ctttagggcatgctaaaatagacaaatgtcccattagttcaatgacttttccaatatttgaaaccttcaaacatcccctattgtccaagaaaattaaact |
392 |
Q |
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| T |
18237970 |
ctttagggcatgctaaagtagacaaatgtcccattagttcaatgacttttccaatgtttgaaaccttcaaacatcccctattatccaagaaaattaaact |
18238069 |
T |
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| Q |
393 |
ttagacatattctatcattaattccaaaacagccataggtnnnnnnnnnnnnnnnnnntcattcttacctccatattgggtcagcaataggttgtggatg |
492 |
Q |
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| T |
18238070 |
tcagacatattctatcattaattccaaaacagccataggt---aaaaaaaaaaaaaaatcattcttacctccatattgggtcagcaataggttgtggatg |
18238166 |
T |
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| Q |
493 |
cacactagccgcagcacattcaccgttc |
520 |
Q |
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| T |
18238167 |
cacactagccgcagcacattcaccgttc |
18238194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 330
Target Start/End: Original strand, 11788386 - 11788449
Alignment:
| Q |
267 |
agggagatatctagcctcttcatgaactttagggcatgctaaaatagacaaatgtcccattagt |
330 |
Q |
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| T |
11788386 |
agggatatgtcttgcctcttcaagtactttagggcatgctaatgtggacaaatgtcccattagt |
11788449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 286 - 330
Target Start/End: Original strand, 501468 - 501512
Alignment:
| Q |
286 |
tcatgaactttagggcatgctaaaatagacaaatgtcccattagt |
330 |
Q |
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| T |
501468 |
tcatgaactttagggcatgctaaattggacaaatggccaattagt |
501512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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