View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17588_high_42 (Length: 253)
Name: NF17588_high_42
Description: NF17588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17588_high_42 |
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Alignment Details
Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 38236180 - 38236091
Alignment:
| Q |
16 |
agatgaacactcaaacaaactcgattttgtccatgtttggtttgacaacaaacttggcaaaacctcattgtaaatccaaacataatttat |
105 |
Q |
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| T |
38236180 |
agatgaacactcaaacaaactcgattttgtccatgtttggtttgacaacaaacttggcaaaacctcattgtaaatccaaacataatttat |
38236091 |
T |
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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 235
Target Start/End: Complemental strand, 38235981 - 38235950
Alignment:
| Q |
204 |
tgcggattcgtaaatgactcctccactgaaac |
235 |
Q |
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| T |
38235981 |
tgcggattcgtaaatgactcctccactgaaac |
38235950 |
T |
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