View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17588_high_47 (Length: 237)
Name: NF17588_high_47
Description: NF17588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17588_high_47 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 35567428 - 35567220
Alignment:
| Q |
18 |
ttccatatctgaagtgtcggtgttacatatccaaaaacacatttaaaagtataactactagtaccaattaaatttcttctagttgcaatccccttaacaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
35567428 |
ttccatatctgaagtgtcggtgttacatatccaaaaccacatttaaaagtgtaactactagtaccaattaaatttcttctagttgcaatccctttaacaa |
35567329 |
T |
|
| Q |
118 |
acaatcagaactatggaataaagatgtgttgcactaattaaattgattctgcacaatgt----tttgttatcttgctatcctcatttacttttgcataaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
35567328 |
acaatcagaactatggaataaagatgtgttgcactaattaaattgattcttcacaatgtttgctttgttatcatgctatcctcatttagttttgcataaa |
35567229 |
T |
|
| Q |
214 |
ctttttctt |
222 |
Q |
| |
|
||||||||| |
|
|
| T |
35567228 |
ctttttctt |
35567220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 35582155 - 35581947
Alignment:
| Q |
18 |
ttccatatctgaagtgtcggtgttacatatccaaaaacacatttaaaagtataactactagtaccaattaaatttcttctagttgcaatccccttaacaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
35582155 |
ttccatatctgaagtgtcggtgttacatatccaaaaccacatttaaaagtgtaactactagtaccaattaaatttcttctagttgcaatccctttaacaa |
35582056 |
T |
|
| Q |
118 |
acaatcagaactatggaataaagatgtgttgcactaattaaattgattctgcacaa----tgttttgttatcttgctatcctcatttacttttgcataaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
35582055 |
acaatcagaactatggaataaagatgtgttgcactaattaaattgattcttcacaatgtttgttttgttatcttgctatcctcatttagttttgcaaaaa |
35581956 |
T |
|
| Q |
214 |
ctttttctt |
222 |
Q |
| |
|
||||||||| |
|
|
| T |
35581955 |
ctttttctt |
35581947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University