View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17588_high_50 (Length: 233)
Name: NF17588_high_50
Description: NF17588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17588_high_50 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 27506853 - 27507081
Alignment:
| Q |
1 |
caacacataacttctcgcttgaatgagccataaatctgacactttagcatactgacagattatagagaaattttgtaccataggaattttttagcttgta |
100 |
Q |
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| T |
27506853 |
caacacataacttcttgcttgaatgagccataaatctgacactttagcatactgacagattatagagaaattttgtaccatacaaattttttaacttgta |
27506952 |
T |
|
| Q |
101 |
aaaattatacctttttattggaaacattgaaaaatacttatctgaattaaaagaaaaacaactttcatatttccttcttgtgtaatgacaataagatcgg |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
27506953 |
aaaattatacctttttattggaaacatcgaaaaatacttatctgaattaaaagaaaaacaactttcatatttccttcttgtgtaatgacaataagatcag |
27507052 |
T |
|
| Q |
201 |
ttactttatcaattacaatttcagcactc |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
27507053 |
ttactttatcaattacaatttcagcactc |
27507081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 27485928 - 27485701
Alignment:
| Q |
1 |
caacacataacttctcgcttgaat-gagccataaatctgacactttagcatactgacagatta-tagagaaattttgtaccataggaattttttagcttg |
98 |
Q |
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|||||| |||||||| |||| ||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
27485928 |
caacacgtaacttcttgcttaaattgagccatgaatctgacactttagcatactgacagattagtagagaaattttgtaccataggaattttttaacttg |
27485829 |
T |
|
| Q |
99 |
taaaaattatacctttttattggaaacattgaaaaatacttatctgaattaaaagaaaaacaactttcatatttccttcttgtgtaatgacaataagatc |
198 |
Q |
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||||||||||||||| | |||||||||| |||||||| |||||||||| ||||||||||||||||||||||||| |||||||||| |||| ||||||| |
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| T |
27485828 |
taaaaattataccttctcattggaaacagagaaaaatagttatctgaatcaaaagaaaaacaactttcatatttcgttcttgtgtagtgacggtaagatc |
27485729 |
T |
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| Q |
199 |
ggttactttatcaattacaatttcagca |
226 |
Q |
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||||||||||||||||||||||||||| |
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| T |
27485728 |
agttactttatcaattacaatttcagca |
27485701 |
T |
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Back To:
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