View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17588_low_1 (Length: 668)
Name: NF17588_low_1
Description: NF17588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17588_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 57 - 433
Target Start/End: Original strand, 50604926 - 50605307
Alignment:
| Q |
57 |
aaaaaccatgttaccgtatcacaaagaaaaacatgcatgagtttatttttagagatcagcattcagcagtgagcgtgtttgagaggaga-----agagaa |
151 |
Q |
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| T |
50604926 |
aaaaaccatgttaccgtatcacaaagaaaaacatgcatgagtttatttttagagatcagcattcagcagtgagcgtgtttgagaggagaagagaagagaa |
50605025 |
T |
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| Q |
152 |
gaggacagttggaaatatttattattcatttactcctctttcaaatgtggcagttgagaaatattgaaatttgaaatcaacctttcatccttcactatat |
251 |
Q |
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| T |
50605026 |
gaggacagttggaaatatttattattcatttactcctctttcaaatgtggcagttgagaaatattgaaatttgaaatcaacctttcatccttcactatat |
50605125 |
T |
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| Q |
252 |
aatataacctcactactccttccttcaatactacacattcattaagttcgctaacaatgagagttttttctaatggcgttgtggttgctttcatcctgtg |
351 |
Q |
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| T |
50605126 |
aatataacctcactactccttccttcaatactacacattcattaagttcactaacaatgagagttttttctaatggcgttgtggttgctttcatcctgtg |
50605225 |
T |
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| Q |
352 |
caatattctacttgtcactggcttgtttgaagtggcggatggtagacaagttaaggatgataagcatttgattcatccacca |
433 |
Q |
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| T |
50605226 |
caatattctacttgtcactggcttgtttgaagtggcggatggtagacaagttaaggatgataagcatttgattcatccacca |
50605307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 422 - 459
Target Start/End: Original strand, 50605311 - 50605348
Alignment:
| Q |
422 |
attcatccaccacatttgttaggtcacggattcaaaca |
459 |
Q |
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| T |
50605311 |
attcatccaccacatttgttaggtcacggattcaaaca |
50605348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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