View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17588_low_10 (Length: 454)
Name: NF17588_low_10
Description: NF17588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17588_low_10 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 3 - 454
Target Start/End: Original strand, 42895293 - 42895745
Alignment:
| Q |
3 |
tgattgcggtcacaattttttatattgcaacgaattatggtcaaatacaattcatgca-tctcaacctcagtagcagaaacatcaaaaaccatgatgtta |
101 |
Q |
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| T |
42895293 |
tgattgcggtcacaattttttatattgcaacgaattatggtcaaatacaattcttgcaatctcaacctcagtagcagaaacatcaaaaaccatgatgtta |
42895392 |
T |
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| Q |
102 |
tggccacaatcacagtatgaacacagtatcggttcattttaaaaccctaattatgacaatcacgccattgcctcacctttcttttgcaaaccctaattac |
201 |
Q |
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| T |
42895393 |
tggccacaatcacagtatgaacacagtatcggttcattttaaaaccctaattatgacaatcacgccattgcctcacctttcttttgcaaaccctaattac |
42895492 |
T |
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| Q |
202 |
tacaatcacgccacaattgtggtgtcagtccaattcagaaaccctaattaagacaatcacgctacaatcgtggtattgttccattttaaaaaccctaatt |
301 |
Q |
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| T |
42895493 |
tacaatcacgccacaattgtggtgtcagtccatttcagaaaccctaattaagagaatcacgctacaatcgtggtattgttccattttaaaaaccctaatt |
42895592 |
T |
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| Q |
302 |
aagatgaattccaacacccaaataacagaact-ccacattaccatcagcaagtcaaaaactctacaaatatttatccactattttttgaaacctaacaac |
400 |
Q |
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| T |
42895593 |
aagatgaactccaacacccaaataacagaactcccacattaccatcagcaagtcaaaaactctacaaatatttatccactattttttgaaacctaacaac |
42895692 |
T |
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| Q |
401 |
taaaataaaatgcaacaataatttcaagaaatgaacataaagaatgatactaag |
454 |
Q |
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| T |
42895693 |
taaaataaaatgcaacaataatttcaagaaatgaacataaa-aatgatactaag |
42895745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 127 - 384
Target Start/End: Original strand, 7229583 - 7229833
Alignment:
| Q |
127 |
gtatcggttcattttaaaaccctaattatgacaatcacgccattgcctcacctttcttttgcaaaccctaattactacaatcacgccacaattgtggtgt |
226 |
Q |
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| T |
7229583 |
gtatcgttccatttaaaaaccctaattatgataatcacgccattgtctcacctttcatttgcgaaccctaaatatgacaatcacgtcacaatcgcggtat |
7229682 |
T |
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| Q |
227 |
cagtccaattcagaaaccctaattaagacaatcacgctacaatcgtggtattgttccattttaaaaaccctaattaagatgaattccaacacccaaataa |
326 |
Q |
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| T |
7229683 |
cattccatttta-aaaccctaactatgacagtcacaccacaatcat-------ttccattctaaaaacgctaattaagatgaattccaacacccactaaa |
7229774 |
T |
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| Q |
327 |
cagaactccacattaccatcagcaagt-caaaaactctacaaatatttatccactattt |
384 |
Q |
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| T |
7229775 |
cagaacttcacattatcatcaacaagtaaaaaaactcaaccaaaacttatccactattt |
7229833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 7229513 - 7229564
Alignment:
| Q |
142 |
aaaaccctaattatgacaatcacgccattgcctcacctttcttttgcaaacc |
193 |
Q |
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| T |
7229513 |
aaaaccctaattatgaaaatcacgccattgcctcgcctttcttttgcaaacc |
7229564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 7229381 - 7229450
Alignment:
| Q |
2 |
gtgattgcggtcacaattttttatattgcaacgaattatggtcaaatacaattcatgc-atctcaacctc |
70 |
Q |
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| T |
7229381 |
gtgattgcagtcacagttttttatattgtaactaattatagtcaattacaacttatgcaatctcaacctc |
7229450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 384 - 432
Target Start/End: Original strand, 7229851 - 7229899
Alignment:
| Q |
384 |
ttttgaaacctaacaactaaaataaaatgcaacaataatttcaagaaat |
432 |
Q |
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| T |
7229851 |
tttttaaacctaacaactacaacaaaatgcaacaacaatttcaacaaat |
7229899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 296 - 384
Target Start/End: Original strand, 38897773 - 38897861
Alignment:
| Q |
296 |
ctaattaagatgaattccaacacccaaataacagaactccacattaccatcagcaagtcaaaaactctacaaatatttatccactattt |
384 |
Q |
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| T |
38897773 |
ctaattaagatgaattccaacacccacttaacagaagttcatattatcatcaacaagtaaaaaactcaaccaaaacttatccactattt |
38897861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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