View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17588_low_11 (Length: 440)
Name: NF17588_low_11
Description: NF17588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17588_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 191 - 421
Target Start/End: Original strand, 3342898 - 3343126
Alignment:
| Q |
191 |
agtaagtatcttatcttgtataatgtttacaattaaatctacgtagaaacatatttccacatttatcttatcttatatcattccctcttcttttatttga |
290 |
Q |
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| T |
3342898 |
agtaagtatcttatcttgtataatgtttacaattaaatctacgtagaaacatatttccacatttatcttat-----atcattccctcttcttttatttga |
3342992 |
T |
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| Q |
291 |
cttaaat---gtatccaagccgggctttgggtgtcacgaacctcattccggtgaaatttatcctactattatgtttgaatgggaaatttacatgaagatt |
387 |
Q |
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| T |
3342993 |
cttaaattatgtatccaagccggactttgggtgtcacgaacctcattccggtgaaatttatcctactattatgtttgaatgggaaatttacattaagatt |
3343092 |
T |
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| Q |
388 |
tgctacaatatgtttcttctttgggaatgcttga |
421 |
Q |
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| T |
3343093 |
tgctacaatatgtttcttctttgggaatgcttga |
3343126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 16 - 187
Target Start/End: Original strand, 3342687 - 3342855
Alignment:
| Q |
16 |
attatactacatgttttggaacattattttcttacacatccaccatatcaataacaatcctaatatttcacaaccacctatagacaaacataatccataa |
115 |
Q |
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| T |
3342687 |
attatactacatgttttggaacattattttcttacacatccaccatatcaataacaatcctactatttcacaacc---tatagacaaacataatccataa |
3342783 |
T |
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| Q |
116 |
acatttgaatcccaaacgttaacctctcatcacaatacataaacaaagaaagagaattgaagagaggacaaa |
187 |
Q |
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| T |
3342784 |
acatttgaatcccaaacgttaacctcttatcacaatacataaacaaagaaagagaattgaagagaggacaaa |
3342855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 286 - 421
Target Start/End: Original strand, 3367479 - 3367614
Alignment:
| Q |
286 |
tttgacttaaatgtatccaagccgggctttgggtgtcacgaacctcattccggtgaaatttatcctactattatgtttgaatgggaaatttacatgaaga |
385 |
Q |
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||||| ||||||| ||||||||| |||| ||||||| ||||||||||| ||||||| |||| |||||||||||||||||||||| || ||| | |
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| T |
3367479 |
tttgatttaaatgaatccaagcccaactttaggtgtcatgaacctcattctggtgaaacctatcttactattatgtttgaatgggaagttattatggatt |
3367578 |
T |
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| Q |
386 |
tttgctacaatatgtttcttctttgggaatgcttga |
421 |
Q |
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| T |
3367579 |
attgatatagtatgtttcttctttgggaatgtttga |
3367614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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