View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17588_low_12 (Length: 440)
Name: NF17588_low_12
Description: NF17588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17588_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 18 - 438
Target Start/End: Complemental strand, 43813087 - 43812667
Alignment:
| Q |
18 |
ttcctattgcccacaaattcacaattactcttgnnnnnnnctttatgaaataaccatgaactgtagcatcctctgttgactcgcgcggcacaagtggtcc |
117 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43813087 |
ttcctattgcccacaaattcacaattactcttgtttttttctttatgaaataaccatgaactgtagcatcctctgttgactcgcgcggcacaagtggtcc |
43812988 |
T |
|
| Q |
118 |
tgcaggatataatcttaaggtctccatgatcacaatatctaagtaacttaactttgccatatcattctcctccactaatctgttcatcccaactacacta |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
43812987 |
tgcaggatataatcttaaggtctccatgatcacaatatctaagtaacttaactttgccatatcattctcctccactaatttgttcatcccaactacacta |
43812888 |
T |
|
| Q |
218 |
tccagctcttgttggagatttttcattactcttggatgcctcatgagctcggataaagcccactccacaatggttgcagaagtgtcaaatgccgcggcaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
43812887 |
tccagctcttgttggagatttttcattactcttggatgcctcatgagctcggataaagcccactccacaatggttgcagaagtgtcaaatgccgcggcga |
43812788 |
T |
|
| Q |
318 |
tcatgtctaaggctatagcctttatgtttgttcgatcaatgacatggctttgttcgtcagagggatcaatcgtctggtgcgtcagtgagagtagaatgtc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43812787 |
tcatgtctaaggctatagcctttatgtttgttcgatcaatgacatggctttgttcgtcagagggatcaatcgtctggtgcgtcagtgagagtagaatgtc |
43812688 |
T |
|
| Q |
418 |
tatgaagtttttgtgtctctg |
438 |
Q |
| |
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|||||||||||||||| |||| |
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| T |
43812687 |
tatgaagtttttgtgtttctg |
43812667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 18 - 425
Target Start/End: Complemental strand, 43802518 - 43802111
Alignment:
| Q |
18 |
ttcctattgcccacaaattcacaattactcttgnnnnnnnctttatgaaataaccatgaactgtagcatcctctgttgactcgcgcggcacaagtggtcc |
117 |
Q |
| |
|
||||||||||||| ||||||| ||||| ||||| |||||||||||||||||| ||||||| ||| | |||||||||||| |||||||||||||| |
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| T |
43802518 |
ttcctattgcccataaattcaaaattattcttgtttttttctttatgaaataaccatgcactgtagaatcttgtgttgactcgcgtggcacaagtggtcc |
43802419 |
T |
|
| Q |
118 |
tgcaggatataatcttaaggtctccatgatcacaatatctaagtaacttaactttgccatatcattctcctccactaatctgttcatcccaactacacta |
217 |
Q |
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| ||| |||||||||||||||||||||||||||||||| |||||||||||||||| || |||||| || || |||||| ||||| |||||| || || |
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| T |
43802418 |
cggagggtataatcttaaggtctccatgatcacaatatccaagtaacttaactttgacaaatcattttcttctactaatttgttcgccccaaccacgtta |
43802319 |
T |
|
| Q |
218 |
tccagctcttgttggagatttttcattactcttggatgcctcatgagctcggataaagcccactccacaatggttgcagaagtgtcaaatgccgcggcaa |
317 |
Q |
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|| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||| ||||||||| |||||| |
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| T |
43802318 |
tctagctcttgttggagatttttcatcactcttggatgcctcatgagctctgataaagcccactccacaaccgttgcggaagtttcaaatgccccggcaa |
43802219 |
T |
|
| Q |
318 |
tcatgtctaaggctatagcctttatgtttgttcgatcaatgacatggctttgttcgtcagagggatcaatcgtctggtgcgtcagtgagagtagaatgtc |
417 |
Q |
| |
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||||||||| || |||||||||||||||||||||||||| ||||||| ||| ||||||||||||||| |||| |||||| ||||||||||||||||||| |
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| T |
43802218 |
tcatgtctagggatatagcctttatgtttgttcgatcaacgacatgggttttttcgtcagagggatcgatcggttggtgcatcagtgagagtagaatgtc |
43802119 |
T |
|
| Q |
418 |
tatgaagt |
425 |
Q |
| |
|
|| ||||| |
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|
| T |
43802118 |
tacgaagt |
43802111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 282
Target Start/End: Complemental strand, 29944776 - 29944727
Alignment:
| Q |
233 |
agatttttcattactcttggatgcctcatgagctcggataaagcccactc |
282 |
Q |
| |
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||||||||||| |||||||||||||| | || ||||||||||||||||| |
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| T |
29944776 |
agatttttcatcactcttggatgccttaaaagttcggataaagcccactc |
29944727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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