View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17588_low_13 (Length: 408)
Name: NF17588_low_13
Description: NF17588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17588_low_13 |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 13 - 392
Target Start/End: Original strand, 7774140 - 7774519
Alignment:
| Q |
13 |
ttcttcacattaaccatcaaatttgcttcatgaatagtccattgcactccaccttgaagcataagatcaactcttggtacagaatttttaatgctagatg |
112 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
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| T |
7774140 |
ttcttcacattaaccatcaaatttgcttcatgaatagtccattgcactccaccttgaagcacaagatcaactcttggtacagaatttttaatgctagaag |
7774239 |
T |
|
| Q |
113 |
agtcaaaacatgcctcaaatggtgccactgattccactttctttatttttctatccgaagccttcttgagaaaatcacgaataaatggcttgtatacaga |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7774240 |
agtcaaaacatgcctcaaatggtgccactgattccactctctttatttttctatccgaagccttcttgagaaaatcacgaataaatggcttgtatacaga |
7774339 |
T |
|
| Q |
213 |
actttgcaattcagtgaaaggaattatggtactaattttggtgccaccatttccctttttgtcaatagacaataaagaaggctttaagttcaaaacattg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7774340 |
actttgcaattcagtgaaaggaattatggtactaattttggtgccaccatttccctttttgtcaatagacaataaagaaggctttaagttcaaaacattg |
7774439 |
T |
|
| Q |
313 |
ccatcaaccttcacctctttgacatcaataaaatattcaactgaaggaacaccttgaatagaaactgcacctgttgaaac |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
7774440 |
ccatcaaccttcacctctttgacatcaataaaatattcaactgaaggaacaccttgaacagaaactgcacctgttgaaac |
7774519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 13 - 388
Target Start/End: Original strand, 7766813 - 7767188
Alignment:
| Q |
13 |
ttcttcacattaaccatcaaatttgcttcatgaatagtccattgcactccaccttgaagcataagatcaactcttggtacagaatttttaatgctagatg |
112 |
Q |
| |
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||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
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| T |
7766813 |
ttctttacattaaccatcaaattggcttcatgaatagtccactgcactccaccttgaagcacaagatcaactcttggtacagaatttttaatgctagaag |
7766912 |
T |
|
| Q |
113 |
agtcaaaacatgcctcaaatggtgccactgattccactttctttatttttctatccgaagccttcttgagaaaatcacgaataaatggcttgtatacaga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||| |||||||||||||||||||| |||||||| ||||| |
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| T |
7766913 |
agtcaaaacatgcctcaaatggtgccactgattccactctctttagttttctatctgaagcctttttgagaaaatcacgaataaagggcttgtacacaga |
7767012 |
T |
|
| Q |
213 |
actttgcaattcagtgaaaggaattatggtactaattttggtgccaccatttccctttttgtcaatagacaataaagaaggctttaagttcaaaacattg |
312 |
Q |
| |
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| |||||||||||||||||||| | || |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
7767013 |
agtttgcaattcagtgaaaggactaattgtactaattttggtgccaccgtttccctttttgtcaatagacaacaaagaaggctttatgttcaaaacattg |
7767112 |
T |
|
| Q |
313 |
ccatcaaccttcacctctttgacatcaataaaatattcaactgaaggaacaccttgaatagaaactgcacctgttg |
388 |
Q |
| |
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||||||| ||| || |||| |||||||| |||||||||| ||||| | ||||||||| ||||| |||||||||| |
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| T |
7767113 |
ccatcaatcttaacagctttcacatcaatgaaatattcaattgaagaagcaccttgaacagaaatagcacctgttg |
7767188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 39 - 206
Target Start/End: Complemental strand, 26135822 - 26135656
Alignment:
| Q |
39 |
ttcatgaatagtccattgcactccaccttgaagcataagatcaactcttggtacagaatttttaatgctagatgagtcaaaacatgcctcaaatggtgcc |
138 |
Q |
| |
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||||||||||||||| |||| || ||||||||| |||||||| ||||||| ||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
26135822 |
ttcatgaatagtccactgcataccttcttgaagcaaaagatcaattcttggtgcagaattttcaatgctagttgagtcaaaacatgcctcaaatggtgcc |
26135723 |
T |
|
| Q |
139 |
actgattccactttctttatttttctatccgaagccttcttgagaaaatcacgaataaatggcttgta |
206 |
Q |
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||||||||||| ||||| | |||||||| |||||| ||||||| ||| || |||||||| || ||||| |
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| T |
26135722 |
actgattccac-ttcttgagttttctattcgaagcgttcttgaaaaagtcgcgaataaaaggtttgta |
26135656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 115 - 284
Target Start/End: Complemental strand, 7733843 - 7733674
Alignment:
| Q |
115 |
tcaaaacatgcctcaaatggtgccactgattccactttctttatttttctatccgaagccttcttgagaaaatcacgaataaatggcttgtatacagaac |
214 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||||||||||| |||| ||||||||||| |||||| | || || ||| ||| ||| |||| |
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| T |
7733843 |
tcaaaacatgtatcaaatggtgccactgatgccactttctttatttttttatcagaagccttcttagtaaaatctctaacaagtggtttgaatatggaac |
7733744 |
T |
|
| Q |
215 |
tttgcaattcagtgaaaggaatt-atggtactaattttggtgccaccatttccctttttgtcaatagacaa |
284 |
Q |
| |
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| ||||| ||||| ||||| || || || |||| ||| || |||||||||||||| |||||||| ||||| |
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| T |
7733743 |
tatgcaacacagtg-aaggacttcattgtgctaagttttgttccaccatttcccttattgtcaatggacaa |
7733674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 115 - 188
Target Start/End: Complemental strand, 7699510 - 7699437
Alignment:
| Q |
115 |
tcaaaacatgcctcaaatggtgccactgattccactttctttatttttctatccgaagccttcttgagaaaatc |
188 |
Q |
| |
|
||||||||||| |||||||||||||| || ||||||||||||||||| |||| ||||||||||| | |||||| |
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| T |
7699510 |
tcaaaacatgctccaaatggtgccactaatgccactttctttatttttttatcagaagccttcttcacaaaatc |
7699437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 7726421 - 7726357
Alignment:
| Q |
115 |
tcaaaacatgcctcaaatggtgccactgattccactttctttatttttctatccgaagccttctt |
179 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||||||||||| |||| ||||||||||| |
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| T |
7726421 |
tcaaaacatgtatcaaatggtgccactgatgacactttctttatttttttatcagaagccttctt |
7726357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 115 - 179
Target Start/End: Original strand, 7746059 - 7746123
Alignment:
| Q |
115 |
tcaaaacatgcctcaaatggtgccactgattccactttctttatttttctatccgaagccttctt |
179 |
Q |
| |
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|||||||||| |||||||||||||||||| |||||||||||||||| |||| ||||||||||| |
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| T |
7746059 |
tcaaaacatgtttcaaatggtgccactgatgccactttctttattttattatcagaagccttctt |
7746123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 7711533 - 7711469
Alignment:
| Q |
115 |
tcaaaacatgcctcaaatggtgccactgattccactttctttatttttctatccgaagccttctt |
179 |
Q |
| |
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|||||||||| |||||||||||||||||| ||||||||| |||||| |||| || |||||||| |
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| T |
7711533 |
tcaaaacatgtttcaaatggtgccactgatgacactttcttaatttttttatcagaggccttctt |
7711469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 391
Target Start/End: Complemental strand, 11941 - 11563
Alignment:
| Q |
13 |
ttcttcacattaaccatcaaatttgcttcatgaatagtccattgcactccaccttgaagcataagatcaactcttggtacagaatttttaatgctagatg |
112 |
Q |
| |
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||||| ||||||||||| ||||| | |||||| |||||||| ||||| || |||||||||| |||||||| ||||||| ||||||||| |||||||| | |
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| T |
11941 |
ttctttacattaaccattaaattggtttcatgtatagtccactgcacacctccttgaagcaaaagatcaattcttggtgcagaattttcaatgctagtcg |
11842 |
T |
|
| Q |
113 |
agtcaaaacatgcctcaaatggtgccactgattccactttctttatttttctatccgaagccttcttgagaaaatcacgaataaatggcttgtatacaga |
212 |
Q |
| |
|
||||||||||||| ||||| |||||||| ||||||||| |||| | |||||||||||||||||||||||||||||| |||||||| || ||||| ||||| |
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| T |
11841 |
agtcaaaacatgcgtcaaacggtgccaccgattccactctcttcagttttctatccgaagccttcttgagaaaatcgcgaataaagggtttgtagacaga |
11742 |
T |
|
| Q |
213 |
actttgcaattcagtgaaaggaattatggtactaattttggtgccaccatttccctttttgtcaatagacaataaagaaggctttaagttcaaaacattg |
312 |
Q |
| |
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| ||||||||| |||||||||| | | |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
11741 |
attttgcaatttagtgaaaggactcaaggtactaattttggtgccaccatttccctttttgtcaatagaaaacaaagaaggctttaagttcaaaacatta |
11642 |
T |
|
| Q |
313 |
ccatcaaccttcacctctttgacatcaataaaatattcaactgaaggaacaccttgaatagaaactgcacctgttgaaa |
391 |
Q |
| |
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||||||| ||| | |||| | |||||| ||||||||| ||||||||||||||||||| |||| ||||||||||||| |
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| T |
11641 |
ccatcaatcttaatagctttcaaatcaatgaaatattcatttgaaggaacaccttgaataaaaacagcacctgttgaaa |
11563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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