View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17588_low_15 (Length: 404)
Name: NF17588_low_15
Description: NF17588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17588_low_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 9 - 388
Target Start/End: Original strand, 356492 - 356876
Alignment:
| Q |
9 |
gataatactgacttggttgtgaaggagcaaaataggacaaatttgattttgtcaaatgaggagttgaatcaggaaaatagtgtccttagagacacc---- |
104 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
356492 |
gataacactgacttggttgtgaaggagcaaaataggacaaatttgattttgtcaaatgaggagttgaatcaggaaaatagtgtccttagagacaccccac |
356591 |
T |
|
| Q |
105 |
-agggctttccagattggtgtttcaaggaggatgtctttaccagccagcaatgttgtatcaatggaggcacctattgcctgcactgccatgtcattgacc |
203 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
356592 |
cagggctttgcagattggtgtttcaaggaggatgtctttaccagccagcaatgttgtatcaatggaggcaactattgcctgcactgccatgtcattgacc |
356691 |
T |
|
| Q |
204 |
tctgataaaaggcttgtgagttcctcccatgttgctttatctttcaaacctaatgtagcctttcagaagagtgagaacattttaaaggctttatggggag |
303 |
Q |
| |
|
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
356692 |
tctaataaaaggcttgtgagttcctcccacgttgctttatctttcaaacctaatgaagcctttcagaagagtgagaacattttaaaggctttatggggag |
356791 |
T |
|
| Q |
304 |
atttagtagagggagggagaccaaaataatattcaaacataggaaactcccaacactgttttggtcaccaaaaagcagaaaaaac |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
356792 |
atttagtagagggagggagaccaaaataatatttaaacacaggaaactcccaacactgttttggtcaccaaaaagcagaaaaaac |
356876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 23 - 386
Target Start/End: Original strand, 10582533 - 10582900
Alignment:
| Q |
23 |
ggttgtgaaggagcaaaataggacaaatttgattttgtcaaatgaggagttgaatcaggaaaatagtgtccttagagacaccagggctttccagattggt |
122 |
Q |
| |
|
||||| ||| ||||||| |||| |||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
10582533 |
ggttgcgaaagagcaaacaaggagaaatttagttttgtcaaatgaggagttgtatcaggaaaatagtgtcattagagacaccagggctttgcagattggt |
10582632 |
T |
|
| Q |
123 |
gtttcaaggaggatgtctttaccag----ccagcaatgttgtatcaatggaggcacctattgcctgcactgccatgtcattgacctctgataaaaggctt |
218 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||| ||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||| | |
|
|
| T |
10582633 |
gtttcagggaggatgtctttaccagccagccagcaatattgtatcaacggcggcacctatttcctgcactgccatgtcattgacctctgataaaaggcct |
10582732 |
T |
|
| Q |
219 |
gtgagttcctcccatgttgctttatctttcaaacctaatgtagcctttcagaagagtgagaacattttaaaggctttatggggagatttagtagagggag |
318 |
Q |
| |
|
|| ||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10582733 |
gtaagttcttcccatgttgctttatctttcacgcctaatgaagcctttcagaagagtgagaacattttaaaggctttatggggagatttagtagagggag |
10582832 |
T |
|
| Q |
319 |
ggagaccaaaataatattcaaacataggaaactcccaacactgttttggtcaccaaaaagcagaaaaa |
386 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
10582833 |
ggagaccaaaataatattcaaacacaggaaactcctaacactgttttggtcaccaaaaagcagtaaaa |
10582900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University