View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17588_low_16 (Length: 403)
Name: NF17588_low_16
Description: NF17588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17588_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 85 - 386
Target Start/End: Original strand, 26358012 - 26358321
Alignment:
| Q |
85 |
actttataattgtacttaataaatcaatttgataaaataattattttacttt--------gtatatcgtttaatttgaaaggtggggttgagtacaaact |
176 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
26358012 |
actttataattgtacttaataaatcaatttggtaaaataattattgtatttttttgaagagtatatcgtttaatttgaaaggtggggttgagtacaaact |
26358111 |
T |
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| Q |
177 |
actagacaagggtccatttgtcctttaattctagagcagccggcaacaagttgcatcagattacaaat-catgttcacttaattcttaaattgattgcaa |
275 |
Q |
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|||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
26358112 |
actagagaagggttcatttgtcctttacttctagagcagccggcaacaagttgcatcagattacaaatacatgttcacttaattcttaaattgattgcaa |
26358211 |
T |
|
| Q |
276 |
atgcaaattgagaagtggcaatgcatgcataaatactatacaaattnnnnnnnngagataaatgtacttatatcctaatgttgtttattgttgagaggtc |
375 |
Q |
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|| ||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26358212 |
attcaacttgagaagtggcaatgcatgcatatatactatacaaatt-aaaaaaagagataaatgtacttatatcctaatgttgtttattgttgagaggtc |
26358310 |
T |
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| Q |
376 |
acaatcttcat |
386 |
Q |
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||||||||||| |
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| T |
26358311 |
acaatcttcat |
26358321 |
T |
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