View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17588_low_17 (Length: 389)
Name: NF17588_low_17
Description: NF17588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17588_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 95 - 370
Target Start/End: Original strand, 16875129 - 16875404
Alignment:
| Q |
95 |
ctctaatcacatccaacattatgtcaaaatactgtcagtttattggttattttgttgtttgtattttcagttgactattgcccaagtactaagcacaaca |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16875129 |
ctctaatcacatccaacattatgtcaaaatactgtcagtttattggttattttgttgtttgtattttcagttgactattgcccaagtactaagcacaaca |
16875228 |
T |
|
| Q |
195 |
tataatagttcaacattatataacagttcaacattaatctctacgtttaaattaaactccaacgataaacaagttgcttattatacagtgtcacacaagt |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16875229 |
tataatagttcaacattatataacagttcaacattaatctctacgtttaaattaaactccaacgataaacaagttgcttattatacagtgtcacacaagt |
16875328 |
T |
|
| Q |
295 |
ttaccacttaagagattgatcaataataggagagctctcattttgtatttctactaagttgatttccaatagcaat |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
16875329 |
ttaccacttaagagattgatcaataataggagagctctcattctgtatttctactaagttgatctccaatagcaat |
16875404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 95 - 265
Target Start/End: Original strand, 16581279 - 16581450
Alignment:
| Q |
95 |
ctctaatcacatccaa-cattatgtcaaaatactgtcagtttattggttattttgttgtttgtattttcagttgactattgcccaagtactaagcacaac |
193 |
Q |
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|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| | | ||||||||||| | | |||||||||||||||||||||| |
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| T |
16581279 |
ctctaatcacatccaaacattctgtcaaaatactgtcagtttattggttattttgttatatatattttcagttaagtcttgcccaagtactaagcacaac |
16581378 |
T |
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| Q |
194 |
atataatagttcaacattatataacagttcaacattaatctctacgtttaaattaaactccaacgataaaca |
265 |
Q |
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| T |
16581379 |
gtataatagttcaacattaaataacagttcaacattaatctctacgtttaaattaaactctaacgataaaca |
16581450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 95 - 265
Target Start/End: Complemental strand, 16614101 - 16613930
Alignment:
| Q |
95 |
ctctaatcacatccaa-cattatgtcaaaatactgtcagtttattggttattttgttgtttgtattttcagttgactattgcccaagtactaagcacaac |
193 |
Q |
| |
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|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| | | ||||||||||| | | |||||||||||||||||||||| |
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| T |
16614101 |
ctctaatcacatccaaacattctgtcaaaatactgtcagtttattggttattttgttatatatattttcagttaagtcttgcccaagtactaagcacaac |
16614002 |
T |
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| Q |
194 |
atataatagttcaacattatataacagttcaacattaatctctacgtttaaattaaactccaacgataaaca |
265 |
Q |
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| T |
16614001 |
gtataatagttcaacattaaataacagttcaacattaatctctacgtttaaattaaactctaacgataaaca |
16613930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 95 - 219
Target Start/End: Original strand, 16573295 - 16573420
Alignment:
| Q |
95 |
ctctaatcacatccaa-cattatgtcaaaatactgtcagtttattggttattttgttgtttgtattttcagttgactattgcccaagtactaagcacaac |
193 |
Q |
| |
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|||||||||||||||| |||| ||| |||||||||||||||||||| |||||||||| | ||||||||||||||| |||| |||||||||||||||||| |
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| T |
16573295 |
ctctaatcacatccaaacattctgttaaaatactgtcagtttattgcttattttgttatatgtattttcagttgagtatttcccaagtactaagcacaat |
16573394 |
T |
|
| Q |
194 |
atataatagttcaacattatataaca |
219 |
Q |
| |
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|||| | |||||||||| |||||| |
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| T |
16573395 |
gcataaaaattcaacattacataaca |
16573420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 269
Target Start/End: Complemental strand, 16976988 - 16976917
Alignment:
| Q |
196 |
ataatagttcaacattatataacagttcaacattaatctctacgtttaaattaaactccaacgataaacaagtt |
269 |
Q |
| |
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|||| |||||| |||||||||| ||||||||||| | ||||||||| |||||||||| | | ||||||||||| |
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| T |
16976988 |
ataaaagttcaccattatataagagttcaacattga--tctacgtttcaattaaactcaagcaataaacaagtt |
16976917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 39
Target Start/End: Original strand, 16573212 - 16573240
Alignment:
| Q |
11 |
cacagaggcaaagaaatgtacgagaaaca |
39 |
Q |
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| T |
16573212 |
cacagaggcaaagaaatgtacgagaaaca |
16573240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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