View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17588_low_2 (Length: 602)
Name: NF17588_low_2
Description: NF17588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17588_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 14 - 586
Target Start/End: Original strand, 6068394 - 6068971
Alignment:
| Q |
14 |
agcagagagtcattggttagtgtattggtttggttggctttgattcaatgattctagacttgtgagtataccagggaacagcatctgaactggtaataaa |
113 |
Q |
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| T |
6068394 |
agcagagagtcattggttagtgtattggtttggttcgctttgattcaatgattctagacttgtgagtataccagggaacagcatctgaactggtaataaa |
6068493 |
T |
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| Q |
114 |
acaagactcgttatttcatgataaacttctgtcgtttggaatttatacatgaatcatgatt---aagtttaattttctttaatactagaacttgatgnnn |
210 |
Q |
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| T |
6068494 |
acaagactcgttatttcatgataaacttctgtcgtttggaatttatacatgaatcatgatttttaaatttaattttctttaatactagaacttgatgttt |
6068593 |
T |
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| Q |
211 |
nnnnnnnaatgtacaagttggtgttggtaggtttatttattgaaaaatcagttaacctagttgagattttatttatgtgaagcatatataacacctttta |
310 |
Q |
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| T |
6068594 |
ttcttttaatgtacaagttggtgttggtaggtttatttattgaaaaatcagttaacctagttgagattttatttatgtgaagcatatataacacctttta |
6068693 |
T |
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| Q |
311 |
cttgaccaacgaaatcatagtgttgtctgtaactgtactaggataatggatgaataaagatccaacccatttgtttattaattttgttgttgttagttgg |
410 |
Q |
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| T |
6068694 |
cttgaccaacgaaatcatagtgttgtctgtaactgtactaggataatggatgaataaagatccaacccatttgtttattaattttgttgttgttagttgg |
6068793 |
T |
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| Q |
411 |
gttaatcaa-ttaaaaacatgaataaacaaagtaaaacatgcttgcattcgtcatcaccagcgtcatactagatatttctggaaaggtggtcccaatttc |
509 |
Q |
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| T |
6068794 |
gttaatcaatttaaaaacatgaataaacaaagtaaaacatgcttgcattcgtcatcaccagcgtcatactagatatttctggaaaggtggtcccaatttc |
6068893 |
T |
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| Q |
510 |
at-cttggacaagaattgaaattgcacgtttacattttacacttatcttttgtttcaccatgtttaaggttacatatg |
586 |
Q |
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| T |
6068894 |
atccttggacaagaattgaaattgcacgtttacattttacacttatcttttgtttcaccatgtttaaggttacatatg |
6068971 |
T |
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