View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17588_low_22 (Length: 342)
Name: NF17588_low_22
Description: NF17588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17588_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 30 - 283
Target Start/End: Original strand, 15889671 - 15889924
Alignment:
| Q |
30 |
aaacagttaaaatgtattatactaaactactagtactaactttcatccaataaaatccaagaattgattaaaatttaacaaataatcaatacaagtatat |
129 |
Q |
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| T |
15889671 |
aaacaattgaaatgtattatactaaactactagtactaactttcatccaataaaatcagaaaattgattaaaatttaacaaataatcaatacaagtatgt |
15889770 |
T |
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| Q |
130 |
tcaaattgatgaaactctagaagaacctggtttgtttcttggagctcgacgagagataagcccgaaaacttgcttaatattaatttgatgacctctgaga |
229 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15889771 |
tcaaattgatgaaactctagaagaacctgctttgtttcttggagctcgacgagagataagcccgaaaacttgcttaatattaatttgatgacctctgaga |
15889870 |
T |
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| Q |
230 |
aaacaactctcatttgatgaaaatcttctattacctgctataagattcttcaag |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15889871 |
aaacaactctcatttgatgaaaatcttctattacctgctataagattcttcaag |
15889924 |
T |
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