View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17588_low_29 (Length: 293)
Name: NF17588_low_29
Description: NF17588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17588_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 20 - 280
Target Start/End: Complemental strand, 8918636 - 8918376
Alignment:
| Q |
20 |
gtttcttattcagaattctatgaatacttgatcctccaatgatcaattaatttatagtgccgttatcatgaacaacgatgacaaccaggcatatcattat |
119 |
Q |
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| T |
8918636 |
gtttcttattcagaattctatgaatacttgatcctccaatgatcaattaatttatagtgccgttatcatgaacaacgatgacaaccaggcatatcattat |
8918537 |
T |
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| Q |
120 |
ccaccaacaaatattcatggtcgatctgacatatgtgtaagaatttttctttcactatgtgggtatcttccaaagttttatcaagtgttgaaattaagtt |
219 |
Q |
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| T |
8918536 |
ccaccaacaaatattcatggtcgatctgacatatgtgtaagaatttttctttcacaatgtgggtatcttccaaagtcttatcaagtgttgaaattaagtt |
8918437 |
T |
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| Q |
220 |
gattaaataaagagtctacactcttttttattcaatattttacattaaatttagtattatc |
280 |
Q |
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| T |
8918436 |
gattaaataaagagtctacactcttttttattcaatattttacattaaatttagtattatc |
8918376 |
T |
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