View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17588_low_3 (Length: 565)
Name: NF17588_low_3
Description: NF17588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17588_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 95 - 375
Target Start/End: Original strand, 33028472 - 33028762
Alignment:
| Q |
95 |
cacgcacacaaattttatgtttgtgtagtaataatatccggtcaacaaagttcttnnnnnnntcacaacaacatgattgcatgtttcagaatgcattcag |
194 |
Q |
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| T |
33028472 |
cacgcacacaaattttatgtttgtgtagtaataatatccggtcaacaaagttcttaaaaaaatcacaacaacatgattgcatgtttcagaatgcattcag |
33028571 |
T |
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| Q |
195 |
catgcatgctattcaccaaaaaagaatataaaaagtttttgctatagtatttataaaagatagcatgccttgttcttcttnnnnnnntacagtatgctaa |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
33028572 |
catgcatgctattcaccaaaaaagaatataaaaagtttttgctatagtatttaaaaaagatagcatgccttgttcttcttaaaaaaatacagtatgctaa |
33028671 |
T |
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| Q |
295 |
ttaaaaat----------attaagacagatttttaactttggattccttnnnnnnnttatatttatattttcacatgttagcaagaacctt |
375 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
33028672 |
ttaaaaatattaagtataattaagacagatttttaactttggattccttaaaaaaattatatttatattttcacatgttagcaagaacctt |
33028762 |
T |
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Back To:
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Target: chr8 (Bit Score: 118; Significance: 6e-60; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 429 - 550
Target Start/End: Complemental strand, 23891184 - 23891063
Alignment:
| Q |
429 |
tatactttagaacaaagattaattattctaataatcttgactttgataaaaagatctaatctttttcaaaattttcaagagttgcaatacaaatatgacc |
528 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23891184 |
tatacgttagaacaaagattaattattctaataatcttgactttgataaaaagatctaatctttttcaaaattttcaagagttgcaatacaaatatgacc |
23891085 |
T |
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| Q |
529 |
ggtgcctttgtagcatcaaact |
550 |
Q |
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| T |
23891084 |
ggtgcctttgtagcatcaaact |
23891063 |
T |
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