View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17588_low_31 (Length: 292)

Name: NF17588_low_31
Description: NF17588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17588_low_31
NF17588_low_31
[»] chr6 (15 HSPs)
chr6 (19-280)||(32960434-32960695)
chr6 (141-282)||(29124262-29124400)
chr6 (141-279)||(32744686-32744821)
chr6 (210-279)||(34282035-34282104)
chr6 (193-273)||(29012955-29013035)
chr6 (141-279)||(29137399-29137534)
chr6 (198-276)||(29152009-29152087)
chr6 (198-279)||(34278327-34278408)
chr6 (198-277)||(25319201-25319280)
chr6 (198-277)||(26148894-26148973)
chr6 (198-273)||(32740594-32740669)
chr6 (192-279)||(34258128-34258215)
chr6 (227-273)||(29131431-29131477)
chr6 (193-279)||(29300195-29300281)
chr6 (201-273)||(25519875-25519947)
[»] chr4 (2 HSPs)
chr4 (199-280)||(54294961-54295042)
chr4 (45-102)||(54294798-54294858)
[»] chr7 (1 HSPs)
chr7 (210-276)||(7793940-7794006)


Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 280
Target Start/End: Original strand, 32960434 - 32960695
Alignment:
Q  19 cttagtcgactagtcactttgataagcaattgacaagtcactttgtttacaaaatacccccaataaccacaatcatatagttctgtgaaaacaagnnnnn 118  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  32960434 cttagttgactagtcactttgataagcaattgacaagtcactttgtttacaaaatacccccaataaccacaatcatatagttctgtgaaaacaagaaaaa 32960533  T
Q  119 nnnnttaccaacttaatcctctgaagaatgctttacttgtaaattatgatccgacaatcaggataaatatcccgtttaaaaccaagcttcacaatcattt 218  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32960534 aaaattaccaacttaatcctctgaagaatgctttacttgtaaattatgatccgacaatcaggataaatatcccgtttaaaaccaagcttcacaatcattt 32960633  T
Q  219 gggtacccaaatcaaacaaaactaattcttcatcttttcttatgaagaatatttcccccttc 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32960634 gggtacccaaatcaaacaaaactaattcttcatcttttcttatgaagaatatttcccccttc 32960695  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 141 - 282
Target Start/End: Complemental strand, 29124400 - 29124262
Alignment:
Q  141 gaagaatgctttacttgtaaattatgatccgacaatcaggataaatatcccgtttaaaaccaagcttcacaatcatttgggtacccaaatcaaacaaaac 240  Q
    |||||||||||| |||||||||| | ||||||||  ||||     |||||  |||||||||||||| | ||||||||||||||| |||||||||| || |    
T  29124400 gaagaatgctttccttgtaaattgttatccgacatccaggcc---tatccactttaaaaccaagctcctcaatcatttgggtactcaaatcaaaccaagc 29124304  T
Q  241 taattcttcatcttttcttatgaagaatatttcccccttcat 282  Q
    || ||||| ||||||||| |||||||||||||||||||||||    
T  29124303 tagttctttatcttttctaatgaagaatatttcccccttcat 29124262  T

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Target: chr6; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 141 - 279
Target Start/End: Original strand, 32744686 - 32744821
Alignment:
Q  141 gaagaatgctttacttgtaaattatgatccgacaatcaggataaatatcccgtttaaaaccaagcttcacaatcatttgggtacccaaatcaaacaaaac 240  Q
    |||||||||||| |||||||||| | ||||||||  | ||    ||||||  |||||||||||||| | ||||||||||||||| |||||||||| || |    
T  32744686 gaagaatgctttccttgtaaattgttatccgacatcctggc---atatccactttaaaaccaagctcctcaatcatttgggtactcaaatcaaaccaagc 32744782  T
Q  241 taattcttcatcttttcttatgaagaatatttccccctt 279  Q
     | ||||||||| ||||||||||||||||||||||||||    
T  32744783 cagttcttcatcgtttcttatgaagaatatttccccctt 32744821  T

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Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 210 - 279
Target Start/End: Complemental strand, 34282104 - 34282035
Alignment:
Q  210 caatcatttgggtacccaaatcaaacaaaactaattcttcatcttttcttatgaagaatatttccccctt 279  Q
    ||||||||||||||| |||||||||| || | | ||||| ||||||||||||||||||||||||||||||    
T  34282104 caatcatttgggtactcaaatcaaaccaagccacttctttatcttttcttatgaagaatatttccccctt 34282035  T

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Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 193 - 273
Target Start/End: Complemental strand, 29013035 - 29012955
Alignment:
Q  193 tttaaaaccaagcttcacaatcatttgggtacccaaatcaaacaaaactaattcttcatcttttcttatgaagaatatttc 273  Q
    |||| |||||| || | ||||||||||||||| |||||||| | |||||| ||||||||||||||| ||||||||||||||    
T  29013035 tttataaccaacctcctcaatcatttgggtactcaaatcaagccaaactagttcttcatcttttctgatgaagaatatttc 29012955  T

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Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 141 - 279
Target Start/End: Complemental strand, 29137534 - 29137399
Alignment:
Q  141 gaagaatgctttacttgtaaattatgatccgacaatcaggataaatatcccgtttaaaaccaagcttcacaatcatttgggtacccaaatcaaacaaaac 240  Q
    |||||||| ||| |||||||| ||| |||||||| |||||| ||   |||  |||||||||||||| | | |||||||||||||  ||||||||| || |    
T  29137534 gaagaatggtttccttgtaaactattatccgacattcaggaaaa---tccactttaaaaccaagctcctcgatcatttgggtacttaaatcaaaccaagc 29137438  T
Q  241 taattcttcatcttttcttatgaagaatatttccccctt 279  Q
    || ||||| |||||||||| | ||| |||||||||||||    
T  29137437 tagttctttatcttttcttgtaaaggatatttccccctt 29137399  T

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Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 276
Target Start/End: Original strand, 29152009 - 29152087
Alignment:
Q  198 aaccaagcttcacaatcatttgggtacccaaatcaaacaaaactaattcttcatcttttcttatgaagaatatttcccc 276  Q
    ||||||||| | |||||||||| |||| || ||||||| || ||| ||||| |||||||||||| ||||||||||||||    
T  29152009 aaccaagctcctcaatcatttgagtactcagatcaaaccaagctacttctttatcttttcttataaagaatatttcccc 29152087  T

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Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 279
Target Start/End: Original strand, 34278327 - 34278408
Alignment:
Q  198 aaccaagcttcacaatcatttgggtacccaaatcaaacaaaactaattcttcatcttttcttatgaagaatatttccccctt 279  Q
    ||||||||| | ||||||| ||| ||| |||||||||| || ||| ||||| ||||||| ||||||||||||||| ||||||    
T  34278327 aaccaagctcctcaatcatatggatactcaaatcaaaccaagctacttctttatcttttattatgaagaatattttcccctt 34278408  T

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Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 277
Target Start/End: Original strand, 25319201 - 25319280
Alignment:
Q  198 aaccaagcttcacaatcatttgggtacccaaatcaaacaaaactaattcttcatcttttcttatgaagaatatttccccc 277  Q
    |||||||| || |||||| |||||| | |||||||| | |||||||||| | |||||||||| |||| ||||||||||||    
T  25319201 aaccaagcatctcaatcaattgggtgctcaaatcaagccaaactaattccttatcttttcttttgaaaaatatttccccc 25319280  T

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Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 277
Target Start/End: Original strand, 26148894 - 26148973
Alignment:
Q  198 aaccaagcttcacaatcatttgggtacccaaatcaaacaaaactaattcttcatcttttcttatgaagaatatttccccc 277  Q
    |||||||| || |||||| |||||| | |||||||| | |||||||||| | |||||||||| |||| ||||||||||||    
T  26148894 aaccaagcatctcaatcaattgggtgctcaaatcaagccaaactaattccttatcttttcttttgaaaaatatttccccc 26148973  T

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Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 273
Target Start/End: Original strand, 32740594 - 32740669
Alignment:
Q  198 aaccaagcttcacaatcatttgggtacccaaatcaaacaaaactaattcttcatcttttcttatgaagaatatttc 273  Q
    ||||||||| | ||||| |||| ||||  ||||||| | |||||| ||||||||||||||||| ||||||||||||    
T  32740594 aaccaagctccgcaatcctttgtgtacataaatcaagccaaactagttcttcatcttttcttaggaagaatatttc 32740669  T

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Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 279
Target Start/End: Original strand, 34258128 - 34258215
Alignment:
Q  192 gtttaaaaccaagcttcacaatcatttgggtacccaaatcaaacaaaactaattcttcatcttttcttatgaagaatatttccccctt 279  Q
    ||||| || |||||| | ||||| ||||||| | ||||| |||| || ||| || || ||||||||||||||||||||||||||||||    
T  34258128 gtttataagcaagctcctcaatcgtttgggtgctcaaattaaaccaagctagttttttatcttttcttatgaagaatatttccccctt 34258215  T

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Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 273
Target Start/End: Complemental strand, 29131477 - 29131431
Alignment:
Q  227 aaatcaaacaaaactaattcttcatcttttcttatgaagaatatttc 273  Q
    ||||||| | |||||| ||||||||||||||||| ||||||||||||    
T  29131477 aaatcaagccaaactagttcttcatcttttcttaggaagaatatttc 29131431  T

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Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 279
Target Start/End: Complemental strand, 29300281 - 29300195
Alignment:
Q  193 tttaaaaccaagcttcacaatcatttgggtacccaaatcaaacaaaactaattcttcatcttttcttatgaagaatatttccccctt 279  Q
    |||| ||||||||| | |||||||||| |||| || ||||||| || ||| |||   ||||||| |||| |||||||||||||||||    
T  29300281 tttataaccaagctgctcaatcatttgcgtactcagatcaaaccaagctacttccatatctttttttataaagaatatttccccctt 29300195  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 273
Target Start/End: Original strand, 25519875 - 25519947
Alignment:
Q  201 caagcttcacaatcatttgggtacccaaatcaaacaaaactaattcttcatcttttcttatgaagaatatttc 273  Q
    |||||| | |||||||||| | || |||||||||| |||||| ||||  ||||||||||||||| || |||||    
T  25519875 caagctcctcaatcatttgagcactcaaatcaaaccaaactacttctctatcttttcttatgaataacatttc 25519947  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 199 - 280
Target Start/End: Original strand, 54294961 - 54295042
Alignment:
Q  199 accaagcttcacaatcatttgggtacccaaatcaaacaaaactaattcttcatcttttcttatgaagaatatttcccccttc 280  Q
    |||||||| | ||||||||||| ||| ||||||||||||| ||| ||||| ||||||||||| |||||||||||||||||||    
T  54294961 accaagctcctcaatcatttggctacacaaatcaaacaaagctacttctttatcttttcttacgaagaatatttcccccttc 54295042  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 54294798 - 54294858
Alignment:
Q  45 caattgacaagtcactttgtttacaa---aatacccccaataaccacaatcatatagttct 102  Q
    |||||||| ||||||||||| |||||   |||||||| |||||||||||||||||| ||||    
T  54294798 caattgacgagtcactttgtctacaaggtaataccccaaataaccacaatcatataattct 54294858  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 276
Target Start/End: Complemental strand, 7794006 - 7793940
Alignment:
Q  210 caatcatttgggtacccaaatcaaacaaaactaattcttcatcttttcttatgaagaatatttcccc 276  Q
    |||||||||||||||  | ||||||||| |||||||||   |||||||||  |||||||||||||||    
T  7794006 caatcatttgggtacttagatcaaacaatactaattctctgtcttttctttggaagaatatttcccc 7793940  T

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