View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17588_low_34 (Length: 280)
Name: NF17588_low_34
Description: NF17588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17588_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 26817768 - 26817507
Alignment:
| Q |
1 |
taacaataatgtcaatatttatagggactgctggtgtgtggagaatttcagcattgaatgaagctggtgggtggaaagataggaccactgttgaagatat |
100 |
Q |
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| T |
26817768 |
taacaataatgtcaaaatttatagggactgctggtgtgtggagaatttcagcattgaatgaagctggtgggtggaaagataggaccacagttgaagatat |
26817669 |
T |
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| Q |
101 |
ggacctggctgtacgtgctagtctggaaggatggaaattcttatacctttgtaatttagaggttccaatctcaaaactctcgtctctttacatgttatgt |
200 |
Q |
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| T |
26817668 |
ggacctggctgtacgtgctagtctggaaggatggaaattcttatacctttgtaatttagaggttccaatctcaaaactctcgtctctttacatgttatgt |
26817569 |
T |
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| Q |
201 |
taacaaatttttaatgttacattgattttatttgaatataagttgttcttgatatatgatct |
262 |
Q |
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| T |
26817568 |
taacaaaattttaatgttacattgattttatttgaatataagttgttcttgatatatgatct |
26817507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 26784715 - 26784588
Alignment:
| Q |
21 |
atagggactgctggtgtgtggagaatttcagcattgaatgaagctggtgggtggaaagataggaccactgttgaagatatggacctggctgtacgtgcta |
120 |
Q |
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||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||| || | |||||||| | |
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| T |
26784715 |
atagggactgcgggtgtgtggagaatttcggcgttgaatgaagctggtgggtggaaagataggaccacagttgaagatatggatctatcagtacgtgcaa |
26784616 |
T |
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| Q |
121 |
gtctggaaggatggaaattcttatacct |
148 |
Q |
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| T |
26784615 |
gtctcgaaggatggaaattcttatacct |
26784588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 23 - 148
Target Start/End: Complemental strand, 26831417 - 26831292
Alignment:
| Q |
23 |
agggactgctggtgtgtggagaatttcagcattgaatgaagctggtgggtggaaagataggaccactgttgaagatatggacctggctgtacgtgctagt |
122 |
Q |
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||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||| ||||| || ||||| ||||| ||||||||||||| ||| |
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| T |
26831417 |
agggactgcgggtgtatggagaatttcggcgttgaatgaagctggtgggtggaaagatagaaccaccgtcgaagacatggatttggctgtacgtgccagt |
26831318 |
T |
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| Q |
123 |
ctggaaggatggaaattcttatacct |
148 |
Q |
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|| |||||||||||||||||||||| |
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| T |
26831317 |
ctcaaaggatggaaattcttatacct |
26831292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 167
Target Start/End: Complemental strand, 26791041 - 26790895
Alignment:
| Q |
21 |
atagggactgctggtgtgtggagaatttcagcattgaatgaagctggtgggtggaaagataggaccactgttgaagatatggacctggctgtacgtgcta |
120 |
Q |
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||||||||||||||||| ||||||||||| || ||||||||||| ||||| ||||||||||| ||||| || ||||| ||||| ||||||||||||||| |
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| T |
26791041 |
atagggactgctggtgtatggagaatttcggcgttgaatgaagcgggtggatggaaagatagaaccaccgtcgaagacatggatttggctgtacgtgcta |
26790942 |
T |
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| Q |
121 |
gtctggaaggatggaaattcttatacctttgtaatttagaggttcca |
167 |
Q |
| |
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|||| |||||||||||||| |||| || | |||||| |||||||| |
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| T |
26790941 |
gtctcaaaggatggaaattcctatatctctccaatttacaggttcca |
26790895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 139
Target Start/End: Original strand, 41546852 - 41546961
Alignment:
| Q |
30 |
gctggtgtgtggagaatttcagcattgaatgaagctggtgggtggaaagataggaccactgttgaagatatggacctggctgtacgtgctagtctggaag |
129 |
Q |
| |
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|||||||| ||||||||||||||| | |||||||||||||| ||||| || | || || || |||||||||||||| || ||| | || ||||| ||| |
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| T |
41546852 |
gctggtgtttggagaatttcagcactaaatgaagctggtggatggaaggaccgcacaacagtggaagatatggacctagcagtaagagccagtctcaaag |
41546951 |
T |
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| Q |
130 |
gatggaaatt |
139 |
Q |
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|||||||||| |
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| T |
41546952 |
gatggaaatt |
41546961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 21 - 146
Target Start/End: Original strand, 41919711 - 41919836
Alignment:
| Q |
21 |
atagggactgctggtgtgtggagaatttcagcattgaatgaagctggtgggtggaaagataggaccactgttgaagatatggacctggctgtacgtgcta |
120 |
Q |
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||||||||||| || |||||||||||||| || |||| || |||||||| ||||| ||||||||||| ||||||||||||||| ||||||| | |||| |
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| T |
41919711 |
atagggactgcgggagtgtggagaatttcggcgctgaacgaggctggtggatggaaggataggaccacagttgaagatatggacttggctgttagagcta |
41919810 |
T |
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| Q |
121 |
gtctggaaggatggaaattcttatac |
146 |
Q |
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|||| |||| ||||| ||||||||| |
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| T |
41919811 |
gtctcaaagggtggaagttcttatac |
41919836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 149
Target Start/End: Complemental strand, 20237144 - 20237052
Alignment:
| Q |
57 |
aatgaagctggtgggtggaaagataggaccactgttgaagatatggacctggctgtacgtgctagtctggaaggatggaaattcttatacctt |
149 |
Q |
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|||||||| || || ||||||||||| || || ||||||||||||||||| ||||| || || ||||| ||||||||||| || |||||| |
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| T |
20237144 |
aatgaagcaggaggatggaaagatagaacaacagttgaagatatggacctcgctgttcgagcaagtcttaggggatggaaatttttgtacctt |
20237052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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