View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17588_low_40 (Length: 254)
Name: NF17588_low_40
Description: NF17588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17588_low_40 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 28 - 254
Target Start/End: Complemental strand, 43231970 - 43231744
Alignment:
| Q |
28 |
ggcattttggagagttgtgagtaattaaaaggcgcatagagcagtttcctttccaattgtttgtcgacatcattcaaaacattcaaattatttgaaacgg |
127 |
Q |
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| T |
43231970 |
ggcattctggagagttgtgagtgattaaaaggcgcatagagcagtttcctttccaattgtttgtcgacatcattcgaaacattcaaattatttgaaacgg |
43231871 |
T |
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| Q |
128 |
cattgagcacctttcaagatatacacacttgggaaatgataaataaaaccaaaagttatttcattaatgcccaacaaatggatcttactggttcgtcaac |
227 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
43231870 |
cattgagcacctttcaagctatacacacttgggaaatgataaataaaaccaaaagttatttcattaatgcccaacaaatggatcttactggctcgtcaac |
43231771 |
T |
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| Q |
228 |
ctgataatttccactagaatagaactt |
254 |
Q |
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| T |
43231770 |
ctgataatttccactagaatagaactt |
43231744 |
T |
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