View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17588_low_42 (Length: 254)

Name: NF17588_low_42
Description: NF17588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17588_low_42
NF17588_low_42
[»] chr1 (5 HSPs)
chr1 (6-244)||(7003100-7003339)
chr1 (92-142)||(11985461-11985511)
chr1 (95-142)||(8258919-8258966)
chr1 (5-172)||(17322070-17322237)
chr1 (95-141)||(17694750-17694796)
[»] chr4 (7 HSPs)
chr4 (1-158)||(12328911-12329067)
chr4 (1-158)||(3703584-3703741)
chr4 (110-162)||(9472031-9472083)
chr4 (110-169)||(53860768-53860827)
chr4 (1-43)||(53860893-53860935)
chr4 (95-156)||(5979737-5979798)
chr4 (1-41)||(21538850-21538890)
[»] chr5 (9 HSPs)
chr5 (57-158)||(17350916-17351017)
chr5 (2-41)||(14613550-14613589)
chr5 (1-41)||(6706273-6706313)
chr5 (90-133)||(28976661-28976704)
chr5 (110-167)||(4192000-4192057)
chr5 (1-42)||(4192000-4192041)
chr5 (111-164)||(28976714-28976767)
chr5 (1-41)||(28976714-28976754)
chr5 (124-168)||(35757976-35758020)
[»] chr2 (10 HSPs)
chr2 (5-156)||(39994438-39994591)
chr2 (1-41)||(41325012-41325052)
chr2 (95-162)||(9745449-9745515)
chr2 (1-44)||(24145209-24145252)
chr2 (110-156)||(14251090-14251136)
chr2 (120-158)||(35712121-35712159)
chr2 (3-44)||(9711195-9711236)
chr2 (110-158)||(9711186-9711234)
chr2 (1-41)||(13793680-13793720)
chr2 (1-41)||(41324902-41324942)
[»] chr7 (3 HSPs)
chr7 (105-158)||(36618208-36618261)
chr7 (20-142)||(22555297-22555420)
chr7 (1-42)||(40591605-40591646)
[»] chr3 (2 HSPs)
chr3 (92-141)||(31070708-31070757)
chr3 (1-41)||(26452918-26452958)
[»] chr8 (2 HSPs)
chr8 (79-142)||(9040925-9040987)
chr8 (95-142)||(34677027-34677075)
[»] chr6 (1 HSPs)
chr6 (75-123)||(7641904-7641952)


Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 6 - 244
Target Start/End: Original strand, 7003100 - 7003339
Alignment:
Q  6 cattgtttcttagaaacacatgaaaataaccaaaaaat-cctcaacgatacttaactgccgttgaattataaacagaaaaccgttgataattaactaccg 104  Q
    ||||||||||||||||||||||||||||| |||||||  |||||| |||| |||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  7003100 cattgtttcttagaaacacatgaaaataatcaaaaaaaacctcaatgatatttaactaccgttgacttataaacagaaaaccgttgataattaactaccg 7003199  T
Q  105 ctaagttttttgatcattttcatgtgtttctaggaaactattgttgtgagaacagcaattttcattttaagggtgttcaataataatcttttgtcataag 204  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  7003200 ctaagttttttggtcattttcatgtgtttctaggaaactgttgttgtgagaacagcaattttcattttaagggtgttcaattataatcttttgtcataag 7003299  T
Q  205 cacaattgagttgagaaaaagcccaatatcataagtatta 244  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  7003300 cacaattgagttgagaaaaagcccaatatcataagtatta 7003339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 92 - 142
Target Start/End: Complemental strand, 11985511 - 11985461
Alignment:
Q  92 taattaactaccgctaagttttttgatcattttcatgtgtttctaggaaac 142  Q
    ||||||||||||| | ||||||||| |||||||||||||||||||| ||||    
T  11985511 taattaactaccgatgagttttttggtcattttcatgtgtttctagaaaac 11985461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 142
Target Start/End: Complemental strand, 8258966 - 8258919
Alignment:
Q  95 ttaactaccgctaagttttttgatcattttcatgtgtttctaggaaac 142  Q
    |||||||||||| ||||||||  |||||||||||||||| ||||||||    
T  8258966 ttaactaccgctgagttttttagtcattttcatgtgtttttaggaaac 8258919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 172
Target Start/End: Complemental strand, 17322237 - 17322070
Alignment:
Q  5 ccattgtttcttagaaacacatgaaaataaccaaaaaatcctcaacgatacttaactgccgttgaattataaacagaaaaccgttgataattaactaccg 104  Q
    ||||||||||||||||||||||  ||||||| |||||  | ||| || || ||||||   ||||  ||  || |||||||||   | || |||||||||     
T  17322237 ccattgtttcttagaaacacatagaaataacaaaaaatacatcagcggtaattaactattgttggctttaaagcagaaaaccagcggtagttaactacca 17322138  T
Q  105 ctaagttttttgatcattttcatgtgtttctaggaaactattgttgtgagaacagcaattttcatttt 172  Q
    || |||||||||||||||| ||| |||||||| ||||| ||   ||| | ||||||||||| ||||||    
T  17322137 ctgagttttttgatcatttccatttgtttctaagaaacaatatatgtcaaaacagcaatttccatttt 17322070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 17694796 - 17694750
Alignment:
Q  95 ttaactaccgctaagttttttgatcattttcatgtgtttctaggaaa 141  Q
    ||||||| |||| |||||||| |||||||| ||||||||||||||||    
T  17694796 ttaactatcgctgagttttttaatcattttgatgtgtttctaggaaa 17694750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 8e-39; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 12329067 - 12328911
Alignment:
Q  1 acatccattgtttcttagaaacacatgaaaataaccaaaaaatcctcaacgatacttaactgccgttgaattataaacagaaaaccgttgataattaact 100  Q
    ||||||||||||| |||||||||||||||||| | |||||| |||| | || || |||||| ||  ||||||||||||||||||||| ||||| ||||||    
T  12329067 acatccattgttttttagaaacacatgaaaatgatcaaaaactcct-agcggtagttaactaccactgaattataaacagaaaaccggtgatagttaact 12328969  T
Q  101 accgctaagttttttgatcattttcatgtgtttctaggaaactattgttgtgagaaca 158  Q
    |||| | | ||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  12328968 accgttgatttttttgataattttcatgtgtttttaggaaactattgttgtgagaaca 12328911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 3703584 - 3703741
Alignment:
Q  1 acatccattgtttcttagaaacacatgaaaataaccaaaaaatcctcaacgatacttaactgccgttgaattataaacagaaaaccgttgataattaact 100  Q
    ||||||||||||| |||||||||||||||||| ||||||||||| ||| || || |||||| ||||||| ||||||  |  ||||||  |||||||||||    
T  3703584 acatccattgttttttagaaacacatgaaaatgaccaaaaaatcatcagcggtagttaactaccgttgacttataacaaagaaaccgacgataattaact 3703683  T
Q  101 accgctaagttttttgatcattttcatgtgtttctaggaaactattgttgtgagaaca 158  Q
    ||||||  | |||||| |||||| ||||||||| |||||||||||||||| |||||||    
T  3703684 accgctggggtttttggtcatttccatgtgtttttaggaaactattgttgcgagaaca 3703741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 162
Target Start/End: Original strand, 9472031 - 9472083
Alignment:
Q  110 ttttttgatcattttcatgtgtttctaggaaactattgttgtgagaacagcaa 162  Q
    ||||||||||||||||||| |||| ||||||| ||||||||| |||| |||||    
T  9472031 ttttttgatcattttcatgcgtttttaggaaaatattgttgtaagaatagcaa 9472083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 169
Target Start/End: Complemental strand, 53860827 - 53860768
Alignment:
Q  110 ttttttgatcattttcatgtgtttctaggaaactattgttgtgagaacagcaattttcat 169  Q
    ||||||| |||||| ||||||||||||||||||  | | |||||||| ||||||||||||    
T  53860827 ttttttggtcatttccatgtgtttctaggaaacattggatgtgagaaaagcaattttcat 53860768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 53860935 - 53860893
Alignment:
Q  1 acatccattgtttcttagaaacacatgaaaataaccaaaaaat 43  Q
    |||||||||||||| |||||||||||| |||| ||||||||||    
T  53860935 acatccattgtttcctagaaacacatggaaatgaccaaaaaat 53860893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 156
Target Start/End: Complemental strand, 5979798 - 5979737
Alignment:
Q  95 ttaactaccgctaagttttttgatcattttcatgtgtttctaggaaactattgttgtgagaa 156  Q
    |||||||||||| ||||||||  |||||| ||||||||||||| ||||| ||  ||||||||    
T  5979798 ttaactaccgctgagttttttagtcatttccatgtgtttctagaaaactcttaatgtgagaa 5979737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 21538850 - 21538890
Alignment:
Q  1 acatccattgtttcttagaaacacatgaaaataaccaaaaa 41  Q
    |||||||||||||  |||||||||||| |||||||||||||    
T  21538850 acatccattgttttctagaaacacatggaaataaccaaaaa 21538890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 57 - 158
Target Start/End: Complemental strand, 17351017 - 17350916
Alignment:
Q  57 taactgccgttgaattataaacagaaaaccgttgataattaactaccgctaagttttttgatcattttcatgtgtttctaggaaactattgttgtgagaa 156  Q
    ||||| ||||||  ||||||| |||||||||   ||| |||||| ||||||||||||||||| |||| ||||||||||||| ||||||| ||||||||||    
T  17351017 taactaccgttggcttataaatagaaaaccgacaatagttaactgccgctaagttttttgataatttccatgtgtttctagaaaactatcgttgtgagaa 17350918  T
Q  157 ca 158  Q
    ||    
T  17350917 ca 17350916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 14613550 - 14613589
Alignment:
Q  2 catccattgtttcttagaaacacatgaaaataaccaaaaa 41  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  14613550 catccattgtttcctagaaacacatgaaaataaccaaaaa 14613589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 6706273 - 6706313
Alignment:
Q  1 acatccattgtttcttagaaacacatgaaaataaccaaaaa 41  Q
    |||| |||||||||||| |||||||||||||||||||||||    
T  6706273 acattcattgtttcttataaacacatgaaaataaccaaaaa 6706313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 133
Target Start/End: Complemental strand, 28976704 - 28976661
Alignment:
Q  90 gataattaactaccgctaagttttttgatcattttcatgtgttt 133  Q
    |||| |||||||||||| ||||||||||||||||| ||||||||    
T  28976704 gatagttaactaccgctgagttttttgatcattttaatgtgttt 28976661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 167
Target Start/End: Original strand, 4192000 - 4192057
Alignment:
Q  110 ttttttgatcattttcatgtgtttctaggaaactattgttgtgagaacagcaattttc 167  Q
    ||||||| |||||||||||||||| |||||||| || | ||||  |||||||||||||    
T  4192000 ttttttggtcattttcatgtgtttgtaggaaacaatggatgtgtaaacagcaattttc 4192057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 4192041 - 4192000
Alignment:
Q  1 acatccattgtttcttagaaacacatgaaaataaccaaaaaa 42  Q
    |||||||||||||| || |||||||||||||| |||||||||    
T  4192041 acatccattgtttcctacaaacacatgaaaatgaccaaaaaa 4192000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 28976714 - 28976767
Alignment:
Q  111 tttttgatcattttcatgtgtttctaggaaactattgttgtgagaacagcaatt 164  Q
    ||||||||||||||||||| |||||| ||||| || | |||||||| |||||||    
T  28976714 tttttgatcattttcatgtatttctaagaaacaatggatgtgagaaaagcaatt 28976767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 28976754 - 28976714
Alignment:
Q  1 acatccattgtttcttagaaacacatgaaaataaccaaaaa 41  Q
    ||||||||||||||||||||| |||||||||| | ||||||    
T  28976754 acatccattgtttcttagaaatacatgaaaatgatcaaaaa 28976714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 168
Target Start/End: Complemental strand, 35758020 - 35757976
Alignment:
Q  124 tcatgtgtttctaggaaactattgttgtgagaacagcaattttca 168  Q
    ||||||||||||||||||| || | |||||||| |||||||||||    
T  35758020 tcatgtgtttctaggaaacaatggatgtgagaaaagcaattttca 35757976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 156
Target Start/End: Complemental strand, 39994591 - 39994438
Alignment:
Q  5 ccattgtttcttagaaacacatgaaaataacc--aaaaaatcctcaacgatacttaactgccgttgaattataaacagaaaaccgttgataattaactac 102  Q
    |||||||||  |||||||||||| |||| |||  ||||||| | |||| | | |||||| ||||||| |||||||||||||  |   | || ||||||||    
T  39994591 ccattgttttctagaaacacatggaaatgacccaaaaaaattc-caacaacagttaactaccgttgacttataaacagaaactcaacggtagttaactac 39994493  T
Q  103 cgctaagtttttt-gatcattttcatgtgtttctaggaaactattgttgtgagaa 156  Q
    ||||| ||||||| ||||||||| ||||||||||||||||| |||||||||||||    
T  39994492 cgctacgtttttttgatcatttttatgtgtttctaggaaacgattgttgtgagaa 39994438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 41325052 - 41325012
Alignment:
Q  1 acatccattgtttcttagaaacacatgaaaataaccaaaaa 41  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  41325052 acatccattgtttcttagaaacacatggaaataaccaaaaa 41325012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 9745449 - 9745515
Alignment:
Q  95 ttaactaccgctaagttttttgatcattttcatgtgtttctaggaaactattgttgtgagaacagcaa 162  Q
    |||||||||||| ||||||| | |||||||||| | ||| |||||| |||||||||||||||||||||    
T  9745449 ttaactaccgctgagtttttgg-tcattttcatatatttttaggaagctattgttgtgagaacagcaa 9745515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 24145252 - 24145209
Alignment:
Q  1 acatccattgtttcttagaaacacatgaaaataaccaaaaaatc 44  Q
    ||||||||| ||||||||||||||||| |||| |||||||||||    
T  24145252 acatccattatttcttagaaacacatggaaatgaccaaaaaatc 24145209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 156
Target Start/End: Complemental strand, 14251136 - 14251090
Alignment:
Q  110 ttttttgatcattttcatgtgtttctaggaaactattgttgtgagaa 156  Q
    |||||||||||||||||| | ||| || |||||||||||||||||||    
T  14251136 ttttttgatcattttcatatatttttaagaaactattgttgtgagaa 14251090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 158
Target Start/End: Complemental strand, 35712159 - 35712121
Alignment:
Q  120 attttcatgtgtttctaggaaactattgttgtgagaaca 158  Q
    ||||||||||||||||| |||||| ||||||||||||||    
T  35712159 attttcatgtgtttctacgaaacttttgttgtgagaaca 35712121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 9711195 - 9711236
Alignment:
Q  3 atccattgtttcttagaaacacatgaaaataaccaaaaaatc 44  Q
    |||||| ||||||||||||||||||||||| | |||||||||    
T  9711195 atccatagtttcttagaaacacatgaaaatgagcaaaaaatc 9711236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 9711234 - 9711186
Alignment:
Q  110 ttttttgatcattttcatgtgtttctaggaaactattgttgtgagaaca 158  Q
    ||||||| ||||||||||||||||||| |||||||| | | ||||||||    
T  9711234 ttttttgctcattttcatgtgtttctaagaaactatggatatgagaaca 9711186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 13793680 - 13793720
Alignment:
Q  1 acatccattgtttcttagaaacacatgaaaataaccaaaaa 41  Q
    ||||||||||||||||||||||| |||| ||| ||||||||    
T  13793680 acatccattgtttcttagaaacatatgagaatgaccaaaaa 13793720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 41324902 - 41324942
Alignment:
Q  1 acatccattgtttcttagaaacacatgaaaataaccaaaaa 41  Q
    ||||||||||||||||||||||||||  |||| ||||||||    
T  41324902 acatccattgtttcttagaaacacattgaaattaccaaaaa 41324942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 158
Target Start/End: Original strand, 36618208 - 36618261
Alignment:
Q  105 ctaagttttttgatcattttcatgtgtttctaggaaactattgttgtgagaaca 158  Q
    |||| |||||| |||||||| |||||||| ||||||||||||||||||||||||    
T  36618208 ctaaattttttaatcatttttatgtgtttgtaggaaactattgttgtgagaaca 36618261  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 22555297 - 22555420
Alignment:
Q  20 aacacatgaaaataaccaaaaaatcctcaacgatacttaactgccgttgaattataaacagaaaaccgttgataattaactaccgct-aagttttttgat 118  Q
    |||||||| | |||||||||||  ||| ||||||| |||||| ||||||| ||||||  |||||||||  | || || ||||||||| || ||||||| |    
T  22555297 aacacatggacataaccaaaaacaccttaacgatagttaactaccgttgatttataactagaaaaccgaaggtagtttactaccgctgaatttttttggt 22555396  T
Q  119 cattttcatgtgtttctaggaaac 142  Q
    ||||| ||||| ||  ||||||||    
T  22555397 catttccatgtattattaggaaac 22555420  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 40591646 - 40591605
Alignment:
Q  1 acatccattgtttcttagaaacacatgaaaataaccaaaaaa 42  Q
    |||||||| |||| |||||||||||||||||| |||||||||    
T  40591646 acatccatagtttattagaaacacatgaaaatgaccaaaaaa 40591605  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 141
Target Start/End: Original strand, 31070708 - 31070757
Alignment:
Q  92 taattaactaccgctaagttttttgatcattttcatgtgtttctaggaaa 141  Q
    ||||||||||||||| | |||||| ||||||||||||| |||||||||||    
T  31070708 taattaactaccgctgaattttttaatcattttcatgtttttctaggaaa 31070757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 26452958 - 26452918
Alignment:
Q  1 acatccattgtttcttagaaacacatgaaaataaccaaaaa 41  Q
    ||||||||| |||| ||||||||||||||||| ||||||||    
T  26452958 acatccattatttcctagaaacacatgaaaatgaccaaaaa 26452918  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 142
Target Start/End: Original strand, 9040925 - 9040987
Alignment:
Q  79 agaaaaccgttgataattaactaccgctaagttttttgatcattttcatgtgtttctaggaaac 142  Q
    ||||||| | ||||| |||||||||||| ||||||| | |||||| ||||||||||||||||||    
T  9040925 agaaaactgatgatagttaactaccgctgagtttttag-tcatttccatgtgtttctaggaaac 9040987  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 142
Target Start/End: Original strand, 34677027 - 34677075
Alignment:
Q  95 ttaactaccgctaagttttttg-atcattttcatgtgtttctaggaaac 142  Q
    |||||||||||| ||||||||  ||||||| ||||||||||||||||||    
T  34677027 ttaactaccgcttagttttttttatcatttccatgtgtttctaggaaac 34677075  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 7641904 - 7641952
Alignment:
Q  75 aaacagaaaaccgttgataattaactaccgctaagttttttgatcattt 123  Q
    ||||||||||||  ||||| |||||||||| ||| ||||||||||||||    
T  7641904 aaacagaaaaccaatgatagttaactaccgttaaattttttgatcattt 7641952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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