View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17588_low_46 (Length: 246)
Name: NF17588_low_46
Description: NF17588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17588_low_46 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 3294500 - 3294284
Alignment:
| Q |
18 |
aagtatggcatcgaaaaaacaaaggactattttttgatacatacacctatgcctacatagccaaactagtgtttgcttaatgagaaaaaagtatcataga |
117 |
Q |
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| T |
3294500 |
aagtatggcatcgaaaaaacaaaggactattttttgatacatacacctatgcctatatactcaaactagtgtttgcttaatgagaaaaaagtatcataga |
3294401 |
T |
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| Q |
118 |
tacccacattttcatgtttcatgttgtaatattattactgcatagcactggtatctcatatggatttgtttccgatatgctatctttttagatgctttct |
217 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3294400 |
tatccacattttcatgtttcatgttgtaatattattactgcatagcactggtatctcatatggatttgtttccgatatgctatctttttagatgctttct |
3294301 |
T |
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| Q |
218 |
cagcgtgtgtttccctt |
234 |
Q |
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| T |
3294300 |
cagcgtgtgtttccctt |
3294284 |
T |
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