View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17588_low_48 (Length: 241)
Name: NF17588_low_48
Description: NF17588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17588_low_48 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 3878485 - 3878264
Alignment:
| Q |
1 |
ccttagcaaagacattgccttcatgaccagcaaatcaatagttggtcctgatatgctcaatgatgtagcattcggataacgcctacacatgctcacaact |
100 |
Q |
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| T |
3878485 |
ccttagcaaagacattgccttcatgaccagcaaatcaatagtaggtcctgatatgctcaatgatgtagcattcggataacgcctacacatgctcacaact |
3878386 |
T |
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| Q |
101 |
gtgattatacataaaactttaaataagcacatttataaaactaaaaacttttataaagaatacaacatatactcaagctcgcattgttcttcagatatgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3878385 |
gtgattatacataaaactttaaataagcacatttataaaactaaaaacttttataaagaatacaacatatactcaagctcacattgttcttcagatatgt |
3878286 |
T |
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| Q |
201 |
tccgattttcaaaattcaaatt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
3878285 |
tccgattttcaaaattcaaatt |
3878264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 7 - 134
Target Start/End: Complemental strand, 3864472 - 3864345
Alignment:
| Q |
7 |
caaagacattgccttcatgaccagcaaatcaatagttggtcctgatatgctcaatgatgtagcattcggataacgcctacacatgctcacaactgtgatt |
106 |
Q |
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|||||| |||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||| ||| |
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| T |
3864472 |
caaagagattgccttcatgaccagcaaataaatagaaggtcctgatatgctcaatgctgtagcattcggataacgcctacacatgtcctcaactgtaatt |
3864373 |
T |
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| Q |
107 |
atacataaaactttaaataagcacattt |
134 |
Q |
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| T |
3864372 |
acacattgaactttgaataagtacattt |
3864345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 135 - 220
Target Start/End: Complemental strand, 3864241 - 3864156
Alignment:
| Q |
135 |
ataaaactaaaaacttttataaagaatacaacatatactcaagctcgcattgttcttcagatatgttccgattttcaaaattcaaa |
220 |
Q |
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|||||||||||||| || ||||| || ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
3864241 |
ataaaactaaaaacattcataaataaaacaacatatactcaagctcacattgttcttcagatatgtcccgattttcaaaattcaaa |
3864156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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