View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17588_low_50 (Length: 237)

Name: NF17588_low_50
Description: NF17588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17588_low_50
NF17588_low_50
[»] chr3 (13 HSPs)
chr3 (1-114)||(25658338-25658451)
chr3 (1-114)||(25664743-25664856)
chr3 (1-114)||(25671148-25671261)
chr3 (1-114)||(25677553-25677666)
chr3 (1-114)||(25684227-25684340)
chr3 (141-219)||(25658475-25658553)
chr3 (141-219)||(25664880-25664958)
chr3 (141-219)||(25671285-25671363)
chr3 (141-219)||(25677690-25677768)
chr3 (141-219)||(25684366-25684444)
chr3 (159-211)||(13003147-13003199)
chr3 (159-211)||(31252387-31252439)
chr3 (159-211)||(31093947-31093999)


Alignment Details
Target: chr3 (Bit Score: 102; Significance: 9e-51; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 25658338 - 25658451
Alignment:
Q  1 caccatcgtatgttatatcaactttaagtgcttgaatgtcttctttaaccataaaaactaagctcaattaaatatatgacaaaatgattattattcttgg 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  25658338 caccatcgtatgttatatcaactttaagtacttgaatgtcttctttaaccataaaaactaagctccattaaatatatgacaaaatgaatattattcttgg 25658437  T
Q  101 ctaaatgtaatagt 114  Q
    ||||||||||||||    
T  25658438 ctaaatgtaatagt 25658451  T

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Target: chr3; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 25664743 - 25664856
Alignment:
Q  1 caccatcgtatgttatatcaactttaagtgcttgaatgtcttctttaaccataaaaactaagctcaattaaatatatgacaaaatgattattattcttgg 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  25664743 caccatcgtatgttatatcaactttaagtacttgaatgtcttctttaaccataaaaactaagctccattaaatatatgacaaaatgaatattattcttgg 25664842  T
Q  101 ctaaatgtaatagt 114  Q
    ||||||||||||||    
T  25664843 ctaaatgtaatagt 25664856  T

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Target: chr3; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 25671148 - 25671261
Alignment:
Q  1 caccatcgtatgttatatcaactttaagtgcttgaatgtcttctttaaccataaaaactaagctcaattaaatatatgacaaaatgattattattcttgg 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  25671148 caccatcgtatgttatatcaactttaagtacttgaatgtcttctttaaccataaaaactaagctccattaaatatatgacaaaatgaatattattcttgg 25671247  T
Q  101 ctaaatgtaatagt 114  Q
    ||||||||||||||    
T  25671248 ctaaatgtaatagt 25671261  T

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Target: chr3; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 25677553 - 25677666
Alignment:
Q  1 caccatcgtatgttatatcaactttaagtgcttgaatgtcttctttaaccataaaaactaagctcaattaaatatatgacaaaatgattattattcttgg 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  25677553 caccatcgtatgttatatcaactttaagtacttgaatgtcttctttaaccataaaaactaagctccattaaatatatgacaaaatgaatattattcttgg 25677652  T
Q  101 ctaaatgtaatagt 114  Q
    ||||||||||||||    
T  25677653 ctaaatgtaatagt 25677666  T

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Target: chr3; HSP #5
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 25684227 - 25684340
Alignment:
Q  1 caccatcgtatgttatatcaactttaagtgcttgaatgtcttctttaaccataaaaactaagctcaattaaatatatgacaaaatgattattattcttgg 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  25684227 caccatcgtatgttatatcaactttaagtacttgaatgtcttctttaaccataaaaactaagctccattaaatatatgacaaaatgaatattattcttgg 25684326  T
Q  101 ctaaatgtaatagt 114  Q
    ||||||||||||||    
T  25684327 ctaaatgtaatagt 25684340  T

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Target: chr3; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 141 - 219
Target Start/End: Original strand, 25658475 - 25658553
Alignment:
Q  141 atcttcagtcattaatcaaagaaggagccgtggagctagtgattcctggaaactttccaattgggtgtaatgctggtgt 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25658475 atcttcagtcattaatcaaagaaggagccgtggagctagtgattcctggaaactttccaattgggtgtaatgctggtgt 25658553  T

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Target: chr3; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 141 - 219
Target Start/End: Original strand, 25664880 - 25664958
Alignment:
Q  141 atcttcagtcattaatcaaagaaggagccgtggagctagtgattcctggaaactttccaattgggtgtaatgctggtgt 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25664880 atcttcagtcattaatcaaagaaggagccgtggagctagtgattcctggaaactttccaattgggtgtaatgctggtgt 25664958  T

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Target: chr3; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 141 - 219
Target Start/End: Original strand, 25671285 - 25671363
Alignment:
Q  141 atcttcagtcattaatcaaagaaggagccgtggagctagtgattcctggaaactttccaattgggtgtaatgctggtgt 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25671285 atcttcagtcattaatcaaagaaggagccgtggagctagtgattcctggaaactttccaattgggtgtaatgctggtgt 25671363  T

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Target: chr3; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 141 - 219
Target Start/End: Original strand, 25677690 - 25677768
Alignment:
Q  141 atcttcagtcattaatcaaagaaggagccgtggagctagtgattcctggaaactttccaattgggtgtaatgctggtgt 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25677690 atcttcagtcattaatcaaagaaggagccgtggagctagtgattcctggaaactttccaattgggtgtaatgctggtgt 25677768  T

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Target: chr3; HSP #10
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 141 - 219
Target Start/End: Original strand, 25684366 - 25684444
Alignment:
Q  141 atcttcagtcattaatcaaagaaggagccgtggagctagtgattcctggaaactttccaattgggtgtaatgctggtgt 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25684366 atcttcagtcattaatcaaagaaggagccgtggagctagtgattcctggaaactttccaattgggtgtaatgctggtgt 25684444  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 13003199 - 13003147
Alignment:
Q  159 aagaaggagccgtggagctagtgattcctggaaactttccaattgggtgtaat 211  Q
    |||||||||| |||||||||||| |||| || ||||||||||| |||||||||    
T  13003199 aagaaggagcggtggagctagtggttccagggaactttccaatggggtgtaat 13003147  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 31252387 - 31252439
Alignment:
Q  159 aagaaggagccgtggagctagtgattcctggaaactttccaattgggtgtaat 211  Q
    |||||||||| |||||||||||| |||| || ||||||||||| |||||||||    
T  31252387 aagaaggagcggtggagctagtggttccagggaactttccaatggggtgtaat 31252439  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 31093999 - 31093947
Alignment:
Q  159 aagaaggagccgtggagctagtgattcctggaaactttccaattgggtgtaat 211  Q
    |||||||||| || ||||||||| || | |||||||||||||| |||||||||    
T  31093999 aagaaggagcggttgagctagtggtttcaggaaactttccaatagggtgtaat 31093947  T

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