View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17588_low_54 (Length: 229)
Name: NF17588_low_54
Description: NF17588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17588_low_54 |
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Alignment Details
Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 35309491 - 35309652
Alignment:
| Q |
1 |
agcgtggcatctgttcttattcaaaaaagaaatagcgtggcatgcaaaaactccaatcaaccattcagcacaagtactaatcattaacactatatgacag |
100 |
Q |
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| T |
35309491 |
agcgtggcatatgttcttattcaaaaaagaaatagcgtggcatgcaaaaactccaatcatccattcagcacaagtactaatcattaacattatatgacag |
35309590 |
T |
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| Q |
101 |
ttattagtttgaccaatatttcactc-tagttgtatgcatggacagcaacttgattagagtt |
161 |
Q |
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| T |
35309591 |
ttattagtttgaccaatatttcactcatagttgtatgcatggacatcaacttgattagagtt |
35309652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 12 - 161
Target Start/End: Original strand, 35325725 - 35325875
Alignment:
| Q |
12 |
tgttcttattcaaaaaagaaatagcgtggcatgcaaaaactccaatcaaccattcagcacaagtactaatcattaacacta-tatgacagttattagttt |
110 |
Q |
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|||||||| |||||| ||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
35325725 |
tgttcttacccaaaaaggaaatagcgtggcatgcaaaaactccaatcatccattcggcataagtactaatcattaacactaatatgacagttattagttt |
35325824 |
T |
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| Q |
111 |
gaccaatatttcactctagttgtatgcatggacagcaacttgattagagtt |
161 |
Q |
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| T |
35325825 |
gaccaatatttcactctagttgcatgcatagacagcaacttgattagagtt |
35325875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 35309713 - 35309760
Alignment:
| Q |
164 |
tagtcaaacacatctccatcgttctctgattttcggtgatgacgaatt |
211 |
Q |
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| T |
35309713 |
tagtcaaacacatctacatcgttctttgatttttggtgatgacaaatt |
35309760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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