View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17588_low_6 (Length: 513)
Name: NF17588_low_6
Description: NF17588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17588_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 167 - 477
Target Start/End: Complemental strand, 14855614 - 14855304
Alignment:
| Q |
167 |
tcgctgctttgatgcaagttctttattcatcgttaagcttgaagaaatctgaaactgatagcatattctttgcactgtagaggctatgagagttcacaaa |
266 |
Q |
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| T |
14855614 |
tcgctgctttgatgcaagttctttattcatcgttaagctcgaagaaatcagaaactggtagcatattctttgcattgtagaggctatgagagttcacaaa |
14855515 |
T |
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| Q |
267 |
ttgtcgaaaaacaattagtgttagaattgcagaatatgagatctgatttgaagaaattaaattcaattagattgtgtttgattgagtacggagctcttgc |
366 |
Q |
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| T |
14855514 |
ttatcgaaaaatagttagtgttagaattgcagaatatgagatctgatttgaagaaatgaaattcaattagattgtgtttgattgagtacggagctcttgc |
14855415 |
T |
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| Q |
367 |
agaagagatgaatatggaaagagagagttaccctttggggaaaattcaatgaacccattttttcatctttttgaatatgcaagaaatccatttgaaatca |
466 |
Q |
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| T |
14855414 |
agaatagatgaatatggaaagagagagtcagtttttggggaaaattcaatgaacctattttttcttctttttgaatatgcaagaaatccatttgaaatca |
14855315 |
T |
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| Q |
467 |
gtgaagatttt |
477 |
Q |
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| T |
14855314 |
atgaagatttt |
14855304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 14855781 - 14855667
Alignment:
| Q |
1 |
aataattagaaaatgacatagagtaattagaaataagacaacgtacttggtgtagaaatataggcttcctcaattttggtgcacaatttgagcatgtcgt |
100 |
Q |
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| T |
14855781 |
aataattagaaaatgacatagagtaattagaaataagacaacgtacttggtgtagaaatataggcttcctcaattttggtgcacaatttgagcatgtcgt |
14855682 |
T |
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| Q |
101 |
gtgtattaaccgaca |
115 |
Q |
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| T |
14855681 |
gtgtattaaccgaca |
14855667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 164; Significance: 2e-87; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 171 - 382
Target Start/End: Original strand, 42639390 - 42639601
Alignment:
| Q |
171 |
tgctttgatgcaagttctttattcatcgttaagcttgaagaaatctgaaactgatagcatattctttgcactgtagaggctatgagagttcacaaattgt |
270 |
Q |
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| T |
42639390 |
tgctttgctgcaagttctttattcatcgttaagcttgaagatatcagaaactagtggcatatcctttgcactgtagaggctatgagagttcacaaatggt |
42639489 |
T |
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| Q |
271 |
cgaaaaacaattagtgttagaattgcagaatatgagatctgatttgaagaaattaaattcaattagattgtgtttgattgagtacggagctcttgcagaa |
370 |
Q |
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| T |
42639490 |
cgaaaaacagttagtgttagaattgcagaatatgagatctgatttgaagaaattagattcaactagattgtgtttgatggagtacggagctcttgcagaa |
42639589 |
T |
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| Q |
371 |
gagatgaatatg |
382 |
Q |
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| T |
42639590 |
gagatgaatatg |
42639601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 438 - 481
Target Start/End: Original strand, 42639594 - 42639637
Alignment:
| Q |
438 |
tgaatatgcaagaaatccatttgaaatcagtgaagattttcctt |
481 |
Q |
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| T |
42639594 |
tgaatatgtaagaaatccatttgaaattggtgaagattttcctt |
42639637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 374 - 481
Target Start/End: Complemental strand, 31871515 - 31871410
Alignment:
| Q |
374 |
atgaatatggaaagagagagttaccctttggggaaaattcaatgaacccattttttcatctttttgaatatgcaagaaatccatttgaaatcagtgaaga |
473 |
Q |
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| T |
31871515 |
atgaatatggaaagagag--tcaacttttggggaaaatttaatgaatccattttttcttctttttgaatatgcaagaaatccatttgaaatcggtgaaga |
31871418 |
T |
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| Q |
474 |
ttttcctt |
481 |
Q |
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| T |
31871417 |
ttttcctt |
31871410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 368 - 460
Target Start/End: Original strand, 54848297 - 54848388
Alignment:
| Q |
368 |
gaagagatgaatatggaaagagagagttaccctttggggaaaattcaatgaacccattttttcatctttttgaatatgcaagaaatccatttg |
460 |
Q |
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| T |
54848297 |
gaagagatgaatatagagagagagagtcagtttttggggaaaattcaatgaacccattattt-ttctttttgaatatgcaaggaatccatttg |
54848388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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