View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17588_low_7 (Length: 494)
Name: NF17588_low_7
Description: NF17588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17588_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 13 - 478
Target Start/End: Complemental strand, 44683794 - 44683326
Alignment:
| Q |
13 |
aaaattctatgataccaatgtattcttctattttaacaaaatatttgttgtttttagaacactaggttgagtctgattcaaccttacaaaatcgattttg |
112 |
Q |
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| T |
44683794 |
aaaattctatgataccaatgtattcttctattttaacaaaatatttgttgtttttagaacattaggttcagtttaattcaaccttacaaaatcgattttt |
44683695 |
T |
|
| Q |
113 |
aaggtgaaaaatgtcatcctttacattactcacgaaaaacattttcatataggaaaaagtattaacacaactaattgaatgaaacttattcaaatttaat |
212 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44683694 |
aaggtgaaaaatgtcctcctttacattactcacgaaaaacattttcatataggaaaaagtattaacacaactaattgaatgaaacttattcaaatttaat |
44683595 |
T |
|
| Q |
213 |
tgaaaactatgattatgtagaattcttccctcaagcaaggcttcgtgtttaatttaaggatataccgtaaatgaatgattacttgatttcatctaaaata |
312 |
Q |
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| T |
44683594 |
tgaaaactatgattatgtagaattcttaactcaagcaaggcttcgtgtttaatttaagaatataccgtaaatgaatgattacttgatttcatctaaaata |
44683495 |
T |
|
| Q |
313 |
ttgttttggt---gatgttacaggctctaagggttagcttcaagaaacctattggcagtgtaactatttcaggtcacaagtttttgggatgcccatctcc |
409 |
Q |
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|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44683494 |
ttgttttggtgatgatgttacaggctctaaaggttagcttcaagaaacctattggcagtgtaactatttcaggtcacaagtttttgggatgcccatctcc |
44683395 |
T |
|
| Q |
410 |
ttgcggtgttgtgataactcgtttgcaatacatgaatgcaatatctagagatgttggcatcattgcttc |
478 |
Q |
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| T |
44683394 |
ttgcggtgttgtgataactcgtttgaaatacatgagtgcgatatctagagatgttggcatcattgcttc |
44683326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 297 - 478
Target Start/End: Complemental strand, 44660362 - 44660181
Alignment:
| Q |
297 |
gatttcatctaaaatattgttttggtgatgttacaggctctaagggttagcttcaagaaacctattggcagtgtaactatttcaggtcacaagtttttgg |
396 |
Q |
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||||| ||||||||| ||| |||| |||| | |||||| |||| |||||||||||||||| || | ||||||||| |||||||| || |||||||||| |
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| T |
44660362 |
gattttatctaaaattttgctttgctgattgaataggctccaaggattagcttcaagaaacccatcgacagtgtaacaatttcaggccataagtttttgg |
44660263 |
T |
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| Q |
397 |
gatgcccatctccttgcggtgttgtgataactcgtttgcaatacatgaatgcaatatctagagatgttggcatcattgcttc |
478 |
Q |
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| T |
44660262 |
gatgcccatcaccttgtggtgttttgataactcgtttgaaatacatgaatgcactatctagagatgttgacatcattgcttc |
44660181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 302 - 465
Target Start/End: Original strand, 29357453 - 29357616
Alignment:
| Q |
302 |
catctaaaatattgttttggtgatgttacaggctctaagggttagcttcaagaaacctattggcagtgtaactatttcaggtcacaagtttttgggatgc |
401 |
Q |
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|||||||||| || |||||||||| ||| ||||||||||| ||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||| |
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| T |
29357453 |
catctaaaattttattttggtgattttataggctctaaggattagcttcaagaaacctatcgacagtgtaactatttcaggtcataagtttttgggatgc |
29357552 |
T |
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| Q |
402 |
ccatctccttgcggtgttgtgataactcgtttgcaatacatgaatgcaatatctagagatgttg |
465 |
Q |
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|||| |||||| |||||| |||||||||||||| |||| || |||||| ||||||||||||||| |
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| T |
29357553 |
ccatttccttgtggtgttttgataactcgtttgaaatatatcaatgcactatctagagatgttg |
29357616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 302 - 465
Target Start/End: Original strand, 29341426 - 29341589
Alignment:
| Q |
302 |
catctaaaatattgttttggtgatgttacaggctctaagggttagcttcaagaaacctattggcagtgtaactatttcaggtcacaagtttttgggatgc |
401 |
Q |
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| T |
29341426 |
catctaaaattttattttggtgattgtgtaggctctaaggattagcttcaagaaacctatcgacagtgtaactatttcaggtcataagtttttgggatgc |
29341525 |
T |
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| Q |
402 |
ccatctccttgcggtgttgtgataactcgtttgcaatacatgaatgcaatatctagagatgttg |
465 |
Q |
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||||||||||| |||||| |||||||||||||| |||| || |||||| ||||||||||||||| |
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| T |
29341526 |
ccatctccttgtggtgttttgataactcgtttgaaatatatcaatgcactatctagagatgttg |
29341589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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