View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17589_high_18 (Length: 250)
Name: NF17589_high_18
Description: NF17589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17589_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 51849433 - 51849194
Alignment:
| Q |
1 |
gaccattttaataggtactatgactactcattacacattcagatatcaaaatgactgttaccttttaaaatgtcgacctttctttattattctgcggagc |
100 |
Q |
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| T |
51849433 |
gaccattttaataggtactatgactactcattacacattcagatatcaaaataactgttaccttttaaaatgtcaacctttctttattattctgcggagc |
51849334 |
T |
|
| Q |
101 |
ttagattataatcatgatgannnnnnnatgttataataatgtgacctggtctaataatgtaagcttgaactaacgtgaactgctaccacaagacagagta |
200 |
Q |
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| T |
51849333 |
ttagattataatcatgatgatttttttatgttataataatgtgacctggtctaatattgtaagcttgaactaacgtgaactgctaccacaagacagagta |
51849234 |
T |
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| Q |
201 |
ccgaatagttgtctggaatttgaaatgttttggatattgt |
240 |
Q |
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|||||||||| |||||||||||||||||||||||| |||| |
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| T |
51849233 |
ccgaatagttttctggaatttgaaatgttttggattttgt |
51849194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 45392327 - 45392286
Alignment:
| Q |
21 |
tgactactcattacacattcagatatcaaaatgactgttacc |
62 |
Q |
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| T |
45392327 |
tgactactcattacacattcaggaatcaaaatgactattacc |
45392286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 51889796 - 51889755
Alignment:
| Q |
21 |
tgactactcattacacattcagatatcaaaatgactgttacc |
62 |
Q |
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||||||||| ||||||||||||| |||||||||||| ||||| |
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| T |
51889796 |
tgactactccttacacattcagagatcaaaatgactattacc |
51889755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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