View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17589_high_3 (Length: 465)

Name: NF17589_high_3
Description: NF17589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17589_high_3
NF17589_high_3
[»] chr5 (7 HSPs)
chr5 (26-448)||(6611677-6612097)
chr5 (133-225)||(8249076-8249168)
chr5 (133-225)||(4926210-4926301)
chr5 (133-225)||(42457106-42457198)
chr5 (337-379)||(18967458-18967500)
chr5 (133-246)||(17972440-17972553)
chr5 (24-76)||(20709538-20709590)
[»] chr6 (6 HSPs)
chr6 (150-448)||(24638596-24638901)
chr6 (131-228)||(10303767-10303863)
chr6 (133-228)||(19153932-19154027)
chr6 (323-375)||(10303617-10303669)
chr6 (382-414)||(15820162-15820194)
chr6 (140-216)||(17293345-17293421)
[»] chr4 (7 HSPs)
chr4 (268-418)||(5634385-5634541)
chr4 (133-225)||(40434545-40434637)
chr4 (133-225)||(5634257-5634349)
chr4 (21-76)||(3018337-3018392)
chr4 (24-76)||(36887679-36887731)
chr4 (93-131)||(36887750-36887788)
chr4 (24-77)||(31944276-31944329)
[»] chr7 (3 HSPs)
chr7 (131-376)||(10274879-10275123)
chr7 (133-302)||(40682104-40682273)
chr7 (24-81)||(31852152-31852209)
[»] chr2 (9 HSPs)
chr2 (324-379)||(9583859-9583914)
chr2 (276-448)||(32151117-32151295)
chr2 (265-379)||(13880263-13880377)
chr2 (265-379)||(14020388-14020502)
chr2 (93-131)||(30958753-30958791)
chr2 (133-209)||(9584030-9584106)
chr2 (23-76)||(26236125-26236178)
chr2 (23-76)||(26560554-26560607)
chr2 (44-76)||(26136144-26136176)
[»] chr1 (7 HSPs)
chr1 (268-379)||(3927040-3927151)
chr1 (268-379)||(27100065-27100176)
chr1 (323-379)||(9484436-9484492)
chr1 (133-294)||(44889608-44889769)
chr1 (337-379)||(22583642-22583684)
chr1 (139-216)||(48611362-48611439)
chr1 (98-130)||(21091860-21091892)
[»] chr3 (4 HSPs)
chr3 (93-130)||(3424845-3424882)
chr3 (22-76)||(36990986-36991040)
chr3 (22-76)||(37016426-37016480)
chr3 (23-76)||(15328788-15328841)
[»] chr8 (1 HSPs)
chr8 (23-76)||(14767504-14767557)


Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 26 - 448
Target Start/End: Original strand, 6611677 - 6612097
Alignment:
Q  26 ggttaatatttcttttgatccttgtaatattaacgaattttggttttagtctttgtnnnnnnnnnnntagatttcatcactatcatttgagattcttcca 125  Q
    ||||||||||||||||||||| | |||||||| | |||||| |||||||||| |||           ||||||||| || ||||||||||||||||||||    
T  6611677 ggttaatatttcttttgatccctataatattagcaaatttttgttttagtctctgtaaaaaaaaa--tagatttcaacattatcatttgagattcttcca 6611774  T
Q  126 cttttgtgtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaa 225  Q
    |||||| ||||  | |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  6611775 cttttgggtggaggcggaggcggaggttgtttgtgtgggaagatgagcagttgggggaactatgtttattacttcaaactgtgattttgcaggttgacaa 6611874  T
Q  226 ggacaacagatgattatggaatctnnnnnnntctaatgatttctctgttcgtagtgcttacaattttcagactgctcgggtcattgttgacgctccagtg 325  Q
    |||| |||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||    
T  6611875 ggacgacagatgattatggaatctagaaaaatctaatgatttctctgttcgtagtgcttacaattttcagactgctcaggtcattgttgacgctccggtg 6611974  T
Q  326 gatgtgaagttgctttggcataaggatatccctatgaaggttgtggtttttgctccgtttcggaatagattgccaacaaaagataacttgcttctgtgtg 425  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  6611975 gatgtgaagttgctttgacataaggatatccctctgaaggttgtggtttttgctccgtttcggaatagattgccaacaaaagataacttgcttctacgtg 6612074  T
Q  426 gagttataactaatgattcttgt 448  Q
    |||||||||||||||||||||||    
T  6612075 gagttataactaatgattcttgt 6612097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 133 - 225
Target Start/End: Complemental strand, 8249168 - 8249076
Alignment:
Q  133 gtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaa 225  Q
    |||| |||||||||||||||||||||| |||||||| || ||||||||||||  ||||||||| || |||| |||||||||||| ||||||||    
T  8249168 gtggaagtggaggcggaggttgtttgcatgggaagaggagcagttgggggaaaaatgtttattgcttcaaaatgtgattttgcaggttgacaa 8249076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 133 - 225
Target Start/End: Original strand, 4926210 - 4926301
Alignment:
Q  133 gtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaa 225  Q
    |||| |||||||||||||||||||||| ||||| || || ||||||||| ||||||||||| |||| |||| |||||||||||| ||||||||    
T  4926210 gtggaagtggaggcggaggttgtttgcatgggaggaggagcagttgggg-aactatgtttactacttcaaagtgtgattttgcaagttgacaa 4926301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 133 - 225
Target Start/End: Original strand, 42457106 - 42457198
Alignment:
Q  133 gtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaa 225  Q
    |||| |||||||||||||||||||||||||||| || || ||| |||||||| |||||||||| || |||| ||||| |||||| ||||||||    
T  42457106 gtggaagtggaggcggaggttgtttgcgtgggaggaggagcaggtgggggaattatgtttattgcttcaaaatgtgactttgcaagttgacaa 42457198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 337 - 379
Target Start/End: Original strand, 18967458 - 18967500
Alignment:
Q  337 gctttggcataaggatatccctatgaaggttgtggtttttgct 379  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  18967458 gctttggcataaggatatccctatgaaggttgtgctttttgct 18967500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 133 - 246
Target Start/End: Complemental strand, 17972553 - 17972440
Alignment:
Q  133 gtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaaggacaac 232  Q
    |||| |||||||||| ||||||||||| |||||||| || ||| ||| |||| ||||| |||| || |||| |||||||||||| | |||||| ||  ||    
T  17972553 gtggaagtggaggcgaaggttgtttgcatgggaagaggagcagatggaggaattatgtctattgcttcaaaatgtgattttgcaggctgacaaagaggac 17972454  T
Q  233 agatgattatggaa 246  Q
    |||||  |||||||    
T  17972453 agatggatatggaa 17972440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 20709590 - 20709538
Alignment:
Q  24 agggttaatatttcttttgatccttgtaatattaacgaattttggttttagtc 76  Q
    ||||||||||  ||||||  ||| |||||||||||||||||||||||||||||    
T  20709590 agggttaatacctcttttcgtccatgtaatattaacgaattttggttttagtc 20709538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 134; Significance: 1e-69; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 150 - 448
Target Start/End: Original strand, 24638596 - 24638901
Alignment:
Q  150 ggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaaggacaacagatgattatggaatct 249  Q
    ||||| ||||||||||||| ||  |||| |||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||  ||| |||| |    
T  24638596 ggttgcttgcgtgggaagaggagaagttaggggaactatgtttattacttcaaactgtgattttgcaggttgacaaggacgacagatggctattgaatat 24638695  T
Q  250 nnnnnnntctaatgatttctctgttcgtagtgcttacaatttt-cagactgctcgggtcattgttgacgctccagtggatgtgaagttgctttggcataa 348  Q
           ||||||| ||||||  ||||||||| |||||||||| |||| ||||| | | |||||||||||||| |||||||||||| ||||||| |||||    
T  24638696 gaaaaaatctaatgctttctcctttcgtagtgtttacaatttttcagattgctcagcttattgttgacgctccggtggatgtgaagctgctttgacataa 24638795  T
Q  349 ggatatccctatgaaggttgtggtttttgc------tccgtttcggaatagattgccaacaaaagataacttgcttctgtgtggagttataactaatgat 442  Q
    |||||||||| |||||||||||||||||||      ||  |||| |||||||||| ||||||||||||||||||||| | ||||||||||||||||||||    
T  24638796 ggatatccctctgaaggttgtggtttttgcttggcgtctatttcagaatagattgtcaacaaaagataacttgcttcggcgtggagttataactaatgat 24638895  T
Q  443 tcttgt 448  Q
    ||||||    
T  24638896 tcttgt 24638901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 131 - 228
Target Start/End: Complemental strand, 10303863 - 10303767
Alignment:
Q  131 gtgtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaagga 228  Q
    |||||| ||||||||||||||||||||| || | |||| || ||| ||||||||||  | |||||| |||||||||||| |||||| |||||||||||    
T  10303863 gtgtggaagtggaggcggaggttgtttgtgttg-aagaggagcaggtgggggaacttagattattagtccaaactgtgactttgcaggttgacaagga 10303767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 228
Target Start/End: Complemental strand, 19154027 - 19153932
Alignment:
Q  133 gtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaagga 228  Q
    |||| |||||||||| ||||||||||| |||||||| ||  || |||| ||||| |||||||||||  ||| ||||| ||| || ||| |||||||    
T  19154027 gtggaagtggaggcgaaggttgtttgcttgggaagaggataaggtgggagaactttgtttattacttgaaaatgtgaatttacaggttaacaagga 19153932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 375
Target Start/End: Complemental strand, 10303669 - 10303617
Alignment:
Q  323 gtggatgtgaagttgctttggcataaggatatccctatgaaggttgtggtttt 375  Q
    ||||||||  |||||||||||||||||||| ||||| |||| |||||| ||||    
T  10303669 gtggatgttgagttgctttggcataaggatgtccctttgaatgttgtgatttt 10303617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 414
Target Start/End: Complemental strand, 15820194 - 15820162
Alignment:
Q  382 gtttcggaatagattgccaacaaaagataactt 414  Q
    ||||||||||||||| |||||||||||||||||    
T  15820194 gtttcggaatagattaccaacaaaagataactt 15820162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 216
Target Start/End: Complemental strand, 17293421 - 17293345
Alignment:
Q  140 tggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgca 216  Q
    |||||| |||||||||||||||||||||| ||   | ||||||||||  | |||||||| |||| ||||| ||||||    
T  17293421 tggaggtggaggttgtttgcgtgggaagaagagttggtgggggaacttaggttattacttcaaaatgtgactttgca 17293345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 268 - 418
Target Start/End: Original strand, 5634385 - 5634541
Alignment:
Q  268 ctctgttcgtagtgcttacaattttcagactgctcgggtcattgttgacgctccagtggatgtgaagttgctttggcataaggatatccctatgaaggtt 367  Q
    |||||||||||||||||||||||| |||||| ||| |   ||||||||| |||| ||||||||||||| ||| ||||| |||||||||||| ||||||||    
T  5634385 ctctgttcgtagtgcttacaatttccagactactcagcagattgttgacactcctgtggatgtgaagtcgctatggcaaaaggatatccctttgaaggtt 5634484  T
Q  368 gtggtttttgct------ccgtttcggaatagattgccaacaaaagataacttgctt 418  Q
    ||| |||| |||        |||||||||||||||||| || ||||||||| |||||    
T  5634485 gtgattttcgcttggcgattgtttcggaatagattgccgaccaaagataacctgctt 5634541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 133 - 225
Target Start/End: Original strand, 40434545 - 40434637
Alignment:
Q  133 gtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaa 225  Q
    |||| ||||||||||||||||||||||||||||||| ||  ||||||||||| |||||||||| || |||| | |||||||||| ||||||||    
T  40434545 gtggaagtggaggcggaggttgtttgcgtgggaagaggagtagttgggggaattatgtttattgcttcaaaatatgattttgcaggttgacaa 40434637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 133 - 225
Target Start/End: Original strand, 5634257 - 5634349
Alignment:
Q  133 gtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaa 225  Q
    |||| |||||||||||||| |||||| ||||||||| ||  || |||||||||||||||||||||| || | ||||| |||||| ||||||||    
T  5634257 gtggaagtggaggcggaggctgtttgtgtgggaagaggagaaggtgggggaactatgtttattacttcacaatgtgactttgcatgttgacaa 5634349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 3018392 - 3018337
Alignment:
Q  21 aatagggttaatatttcttttgatccttgtaatattaacgaattttggttttagtc 76  Q
    |||||||||||||| ||||||  ||| |||||||||||||||||| ||||||||||    
T  3018392 aatagggttaatatctcttttcgtccctgtaatattaacgaatttcggttttagtc 3018337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 36887679 - 36887731
Alignment:
Q  24 agggttaatatttcttttgatccttgtaatattaacgaattttggttttagtc 76  Q
    ||||||||||  ||||||| ||| |||||||||| ||||||||||||||||||    
T  36887679 agggttaatacctcttttggtccctgtaatattagcgaattttggttttagtc 36887731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 36887750 - 36887788
Alignment:
Q  93 tagatttcatcactatcatttgagattcttccacttttg 131  Q
    |||||| |||| |||||||||||||||||||||||||||    
T  36887750 tagattccatccctatcatttgagattcttccacttttg 36887788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 31944329 - 31944276
Alignment:
Q  24 agggttaatatttcttttgatccttgtaatattaacgaattttggttttagtct 77  Q
    ||||| |||| |||||||  |||||||||||||| ||||||| |||||||||||    
T  31944329 agggtaaatacttcttttcgtccttgtaatattagcgaatttcggttttagtct 31944276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 131 - 376
Target Start/End: Original strand, 10274879 - 10275123
Alignment:
Q  131 gtgtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaaggaca 230  Q
    |||||| |||||||||| ||||||||||||||||| || ||   | ||||||||||  | ||||||||||||||||||| |||| | ||  |||||||      
T  10274879 gtgtggaagtggaggcgaaggttgtttgcgtgggaggaggaggtggtgggggaacttaggttattactccaaactgtgactttggaggtgaacaaggagg 10274978  T
Q  231 acagatgattatggaatctnnnnnnntctaatgatttctctgttcgtagtgcttacaattttcagactgctcgggtcattgttgacgctccagtggatgt 330  Q
    |||  ||  | |||||| |       ||||||| ||| ||||||||||||||||| | |||||  ||||||| |   |||||| || ||| |||||||||    
T  10274979 acatgtggctttggaatttggaaacatctaatgctttttctgttcgtagtgcttatatttttctaactgctcagcctattgtt-acactctagtggatgt 10275077  T
Q  331 gaagttgctttggcataaggatatccctatgaaggttgtggttttt 376  Q
    |||||| ||||||||||| ||| ||||| ||||||||||| |||||    
T  10275078 gaagttactttggcataaagatgtccctttgaaggttgtgattttt 10275123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 133 - 302
Target Start/End: Original strand, 40682104 - 40682273
Alignment:
Q  133 gtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaaggacaac 232  Q
    |||| |||||||| ||||||||||||| ||||| || ||  || |||||||||| ||||||||||| |||| ||| | |||||| ||||| |||||  ||    
T  40682104 gtggaagtggaggaggaggttgtttgcatgggaggaggagaaggtgggggaactttgtttattacttcaaaatgtaactttgcaggttgaaaaggaggac 40682203  T
Q  233 agatgattatggaatctnnnnnnntctaatgatttctctgttcgtagtgcttacaattttcagactgctc 302  Q
    | |||  | || ||| |       |||||||  ||||||||||||||||||||| |||||| | ||||||    
T  40682204 atatggctttgaaatttggaaaaatctaatgtgttctctgttcgtagtgcttacgattttctgtctgctc 40682273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 31852209 - 31852152
Alignment:
Q  24 agggttaatatttcttttgatccttgtaatattaacgaattttggttttagtctttgt 81  Q
    ||||||||||  ||||||  ||| |||||||||||||||||| |||||||||| ||||    
T  31852209 agggttaatacctcttttcgtccctgtaatattaacgaatttcggttttagtcattgt 31852152  T

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Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 324 - 379
Target Start/End: Complemental strand, 9583914 - 9583859
Alignment:
Q  324 tggatgtgaagttgctttggcataaggatatccctatgaaggttgtggtttttgct 379  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9583914 tggatgtgaagtttctttggcataaggatatccctatgaaggttgtggtttttgct 9583859  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 276 - 448
Target Start/End: Original strand, 32151117 - 32151295
Alignment:
Q  276 gtagtgcttacaattttcagactgctcgggtcattgttgacgctccagtggatgtgaagttgctttggcataaggatatccctatgaaggttgtggtttt 375  Q
    ||||||||||||||||| ||| |||||     | |||||||||||  |||||||||||| |||||||||| |||||||||||| |||| || ||||||||    
T  32151117 gtagtgcttacaatttttagattgctcaacatagtgttgacgctcgtgtggatgtgaagctgctttggcaaaaggatatccctctgaatgtcgtggtttt 32151216  T
Q  376 tgc------tccgtttcggaatagattgccaacaaaagataacttgcttctgtgtggagttataactaatgattcttgt 448  Q
     ||      || ||| |  |||||||| ||||||||||||||||| |||| | |||||||| | | |||||||| ||||    
T  32151217 cgctttgcgtctgttacataatagattaccaacaaaagataacttacttcggcgtggagttctcaataatgatttttgt 32151295  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 265 - 379
Target Start/End: Original strand, 13880263 - 13880377
Alignment:
Q  265 tttctctgttcgtagtgcttacaattttcagactgctcgggtcattgttgacgctccagtggatgtgaagttgctttggcataaggatatccctatgaag 364  Q
    ||||||||||||||||||||| ||||||| ||| |||| |   | | ||| |  ||| ||||||| |||||| ||||||||||||||| ||| |||||||    
T  13880263 tttctctgttcgtagtgcttataattttctgacagctcagcctacttttgtcaatccggtggatgcgaagttactttggcataaggatgtccttatgaag 13880362  T
Q  365 gttgtggtttttgct 379  Q
    |||||| ||||||||    
T  13880363 gttgtgatttttgct 13880377  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 265 - 379
Target Start/End: Original strand, 14020388 - 14020502
Alignment:
Q  265 tttctctgttcgtagtgcttacaattttcagactgctcgggtcattgttgacgctccagtggatgtgaagttgctttggcataaggatatccctatgaag 364  Q
    ||||||||||||||||||||| ||||||| ||| |||| |   | | ||| |  ||| ||||||| |||||| ||||||||||||||| ||| |||||||    
T  14020388 tttctctgttcgtagtgcttataattttctgacagctcagcctacttttgtcaatccggtggatgcgaagttactttggcataaggatgtccttatgaag 14020487  T
Q  365 gttgtggtttttgct 379  Q
    |||||| ||||||||    
T  14020488 gttgtgatttttgct 14020502  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 30958753 - 30958791
Alignment:
Q  93 tagatttcatcactatcatttgagattcttccacttttg 131  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  30958753 tagatttcatccctatcatttgagattcttccacttttg 30958791  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 209
Target Start/End: Complemental strand, 9584106 - 9584030
Alignment:
Q  133 gtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtga 209  Q
    |||| |||||||||||||||||||||||||||| || || ||| ||| |||  |||||||||| || |||| |||||    
T  9584106 gtggaagtggaggcggaggttgtttgcgtgggaggaggagcaggtggtggatttatgtttattgcttcaaaatgtga 9584030  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 26236125 - 26236178
Alignment:
Q  23 tagggttaatatttcttttgatccttgtaatattaacgaattttggttttagtc 76  Q
    |||||| ||||| ||||||  |||||||||||||| |||||| |||||||||||    
T  26236125 tagggtaaatatctcttttcgtccttgtaatattagcgaattctggttttagtc 26236178  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 26560554 - 26560607
Alignment:
Q  23 tagggttaatatttcttttgatccttgtaatattaacgaattttggttttagtc 76  Q
    |||||||||||| ||||||  ||| |||||||||||||||||| | ||||||||    
T  26560554 tagggttaatatctcttttcgtccctgtaatattaacgaatttcgattttagtc 26560607  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 76
Target Start/End: Complemental strand, 26136176 - 26136144
Alignment:
Q  44 tccttgtaatattaacgaattttggttttagtc 76  Q
    |||||||||||||||||||||| ||||||||||    
T  26136176 tccttgtaatattaacgaatttcggttttagtc 26136144  T

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Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 268 - 379
Target Start/End: Complemental strand, 3927151 - 3927040
Alignment:
Q  268 ctctgttcgtagtgcttacaattttcagactgctcgggtcattgttgacgctccagtggatgtgaagttgctttggcataaggatatccctatgaaggtt 367  Q
    |||||||||||||||||||||||||| ||||  ||||    | ||||||| ||  ||||||| |||||  || |||||||||||||||||| ||||||||    
T  3927151 ctctgttcgtagtgcttacaattttctgacttatcggcctttagttgacggtcaggtggatgcgaagtctctatggcataaggatatccctctgaaggtt 3927052  T
Q  368 gtggtttttgct 379  Q
    ||||||||||||    
T  3927051 gtggtttttgct 3927040  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 268 - 379
Target Start/End: Complemental strand, 27100176 - 27100065
Alignment:
Q  268 ctctgttcgtagtgcttacaattttcagactgctcgggtcattgttgacgctccagtggatgtgaagttgctttggcataaggatatccctatgaaggtt 367  Q
    |||||||||||||||||| ||||||| |||  ||  |   || ||||||| ||  |||||||||||||  ||||||||||||||||||||| ||||||||    
T  27100176 ctctgttcgtagtgcttataattttctgacatcttagcctatagttgacgttctggtggatgtgaagtctctttggcataaggatatccctctgaaggtt 27100077  T
Q  368 gtggtttttgct 379  Q
    || |||||||||    
T  27100076 gtagtttttgct 27100065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 379
Target Start/End: Original strand, 9484436 - 9484492
Alignment:
Q  323 gtggatgtgaagttgctttggcataaggatatccctatgaaggttgtggtttttgct 379  Q
    |||| |||| ||| ||||| |||||||||||||||| ||||||||||| ||||||||    
T  9484436 gtggttgtgcagtcgcttttgcataaggatatccctctgaaggttgtgctttttgct 9484492  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 294
Target Start/End: Complemental strand, 44889769 - 44889608
Alignment:
Q  133 gtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaaggacaac 232  Q
    |||| ||||||||| |||||| |||| ||||||||| ||  || | |||||||| ||||||||||| |||| ||| | |||||| ||||||| |||  |     
T  44889769 gtggaagtggaggcagaggttatttgtgtgggaagaggagaaggtaggggaactttgtttattacttcaaaatgtaactttgcaggttgacagggaggat 44889670  T
Q  233 agatgattatggaatctnnnnnnntctaatgatttctctgttcgtagtgcttacaattttca 294  Q
    |||||  | |||||| |       ||| |||  | |||||||||||||||||||||||||||    
T  44889669 agatggctttggaatttggaaaaatcttatgcatactctgttcgtagtgcttacaattttca 44889608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 379
Target Start/End: Complemental strand, 22583684 - 22583642
Alignment:
Q  337 gctttggcataaggatatccctatgaaggttgtggtttttgct 379  Q
    |||||||||||||||||| ||| ||||||||||| ||||||||    
T  22583684 gctttggcataaggatattcctctgaaggttgtgctttttgct 22583642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 216
Target Start/End: Complemental strand, 48611439 - 48611362
Alignment:
Q  139 gtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgca 216  Q
    |||||||||||||||||| |||||||| || || | | |||  ||||| ||||||||||| |||| ||||| ||||||    
T  48611439 gtggaggcggaggttgttcgcgtgggaggaggatctggtggaagaactttgtttattacttcaaaatgtgactttgca 48611362  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 130
Target Start/End: Original strand, 21091860 - 21091892
Alignment:
Q  98 ttcatcactatcatttgagattcttccactttt 130  Q
    |||||| ||||||||||||||||||||||||||    
T  21091860 ttcatccctatcatttgagattcttccactttt 21091892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 93 - 130
Target Start/End: Original strand, 3424845 - 3424882
Alignment:
Q  93 tagatttcatcactatcatttgagattcttccactttt 130  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  3424845 tagatttcatccctatcatttgagattcttccactttt 3424882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 36991040 - 36990986
Alignment:
Q  22 atagggttaatatttcttttgatccttgtaatattaacgaattttggttttagtc 76  Q
    |||||||||||| | |||||| ||| |||||||||| ||||||| ||||||||||    
T  36991040 atagggttaatactacttttggtccctgtaatattagcgaatttcggttttagtc 36990986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 37016480 - 37016426
Alignment:
Q  22 atagggttaatatttcttttgatccttgtaatattaacgaattttggttttagtc 76  Q
    |||||||||||| | |||||| ||| |||||||||| ||||||| ||||||||||    
T  37016480 atagggttaatactacttttggtccctgtaatattagcgaatttcggttttagtc 37016426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 15328841 - 15328788
Alignment:
Q  23 tagggttaatatttcttttgatccttgtaatattaacgaattttggttttagtc 76  Q
    |||||||||||  |||||| |||  |||||||||| ||||||||||||||||||    
T  15328841 tagggttaatacctcttttcatctctgtaatattagcgaattttggttttagtc 15328788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 14767504 - 14767557
Alignment:
Q  23 tagggttaatatttcttttgatccttgtaatattaacgaattttggttttagtc 76  Q
    |||||||||||  |||||| |||  |||||||||| ||||||||||||||||||    
T  14767504 tagggttaatacctcttttcatctctgtaatattagcgaattttggttttagtc 14767557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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